Package: src:drop-seq Version: 3.0.2+dfsg-1 Severity: important Tags: forky sid ftbfs User: [email protected] Usertags: ftbfs-nocheck-profile
Dear maintainer: During a rebuild of all packages in unstable using the nocheck build profile, your package failed to build. Below you will find how the build ends (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202509/ A wiki page discussing how to reproduce bugs in this category and possible solutions is available here: https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck (It's a wiki, so you are welcome to contribute) [ Note: This is RC, but I will wait at least two weeks before raising the severities, there are a lot of gcc-15 and CMake 4 bugs open now ]. About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:drop-seq, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --with javahelper jh_clean Duplicate specification "unlink|u" for option "u" debian/rules override_dh_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_clean rm -rf dist lib # Removing .class files created during the build. find . -name "*.class" -delete # Removing classes from testFixtures we put under src/tests. rm -r src/tests/java/org/broadinstitute/dropseqrna/utils rm src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java rm: cannot remove 'src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java': No such file or directory make[1]: [debian/rules:56: override_dh_clean] Error 1 (ignored) make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules binary dh binary --with javahelper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_configure mkdir -p lib/test ln -s /usr/share/java/commons-collections4.jar lib/commons-collections4.jar ln -s /usr/share/java/biojava6-alignment.jar lib/biojava6-alignment.jar ln -s /usr/share/java/biojava6-core.jar lib/biojava6-core.jar ln -s /usr/share/java/commons-io.jar lib/commons-io.jar ln -s /usr/share/java/commons-lang.jar lib/commons-lang.jar ln -s /usr/share/java/commons-math3.jar lib/commons-math3.jar ln -s /usr/share/java/htsjdk.jar lib/htsjdk.jar ln -s /usr/share/java/la4j.jar lib/la4j.jar ln -s /usr/share/java/picard.jar lib/picard.jar ln -s /usr/share/java/snakeyaml.jar lib/snakeyaml.jar ln -s /usr/share/java/testng.jar lib/test/testng.jar ln -s /usr/share/java/junit4.jar lib/test/junit.jar # Putting util classes under src/tests so that tests find them. cp -r src/testFixtures/java/org/broadinstitute/dropseqrna/utils src/tests/java/org/broadinstitute/dropseqrna cp -r src/testFixtures/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java src/tests/java/org/broadinstitute/dropseqrna/barnyard make[1]: Leaving directory '/<<PKGBUILDDIR>>' jh_linkjars dh_auto_build ant -propertyfile ./debian/ant.properties -Duser.name debian Buildfile: /<<PKGBUILDDIR>>/build.xml [taskdef] Could not load definitions from resource testngtasks. It could not be found. compile-src: [mkdir] Created dir: /<<PKGBUILDDIR>>/classes [javac] Compiling 354 source files to /<<PKGBUILDDIR>>/classes [javac] Note: Annotation processing is enabled because one or more processors were found [javac] on the class path. A future release of javac may disable annotation processing [javac] unless at least one processor is specified by name (-processor), or a search [javac] path is specified (--processor-path, --processor-module-path), or annotation [javac] processing is enabled explicitly (-proc:only, -proc:full). [javac] Use -Xlint:-options to suppress this message. [javac] Use -proc:none to disable annotation processing. [javac] warning: Implicitly compiled files were not subject to annotation processing. [javac] Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. [javac] Note: /<<PKGBUILDDIR>>/src/java/org/broadinstitute/dropseqrna/utils/FileListParsingUtils.java uses or overrides a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 1 warning compile-tests: [mkdir] Created dir: /<<PKGBUILDDIR>>/testclasses [javac] Compiling 122 source files to /<<PKGBUILDDIR>>/testclasses [javac] Note: Annotation processing is enabled because one or more processors were found [javac] on the class path. A future release of javac may disable annotation processing [javac] unless at least one processor is specified by name (-processor), or a search [javac] path is specified (--processor-path, --processor-module-path), or annotation [javac] processing is enabled explicitly (-proc:only, -proc:full). [javac] Use -Xlint:-options to suppress this message. [javac] Use -proc:none to disable annotation processing. [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtilsTest.java:12: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtilsTest.java:13: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlatTest.java:27: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlatTest.java:28: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/CreateIntervalsFilesTest.java:29: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/CreateIntervalsFilesTest.java:30: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecordsTest.java:29: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecordsTest.java:30: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:28: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:29: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.DataProvider; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:30: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FindGQuadruplexTest.java:26: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FindGQuadruplexTest.java:27: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GQuadruplexTest.java:5: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GQuadruplexTest.java:6: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFReaderTest.java:28: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFReaderTest.java:29: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFRecordTest.java:6: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFRecordTest.java:7: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLengthTest.java:36: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLengthTest.java:37: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReaderTest.java:28: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReaderTest.java:29: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ReduceGtfTest.java:34: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ReduceGtfTest.java:35: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/RefFlatRecordTest.java:3: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/RefFlatRecordTest.java:4: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ValidateReferenceTest.java:28: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ValidateReferenceTest.java:29: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/DropSeqFunctionalDataProcessorTest.java:7: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/DropSeqFunctionalDataProcessorTest.java:8: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/FunctionalDataTest.java:3: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/FunctionalDataTest.java:4: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/StarSoloFunctionalDataProcessorTest.java:4: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/StarSoloFunctionalDataProcessorTest.java:5: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/ClassifyDropSeqFunctionalDataTest.java:8: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/ClassifyDropSeqFunctionalDataTest.java:9: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/DisambiguateFunctionalAnnotationTest.java:5: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/DisambiguateFunctionalAnnotationTest.java:6: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/OptimusDropSeqLocusFunctionComparisonTest.java:4: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/OptimusDropSeqLocusFunctionComparisonTest.java:5: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/OptimusDropSeqLocusFunctionComparisonTest.java:11: error: package org.testng does not exist [javac] import static org.testng.Assert.*; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/BarcodeListRetrievalTest.java:26: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/BarcodeListRetrievalTest.java:27: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:40: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:41: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.DataProvider; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:42: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java:27: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DownsampleTranscriptsAndQuantilesTest.java:10: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DownsampleTranscriptsAndQuantilesTest.java:11: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGeneTest.java:8: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGeneTest.java:9: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/MarkChimericReadsTest.java:29: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/MarkChimericReadsTest.java:30: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscriptsTest.java:5: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscriptsTest.java:6: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollectorTest.java:33: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollectorTest.java:34: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsBestGeneIteratorTest.java:16: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsBestGeneIteratorTest.java:17: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsIteratorTest.java:39: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsIteratorTest.java:40: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsTest.java:33: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsTest.java:34: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/FilterReadsByUMISupportTest.java:8: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/FilterReadsByUMISupportTest.java:11: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCountsTest.java:11: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCountsTest.java:14: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReaderTest.java:12: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReaderTest.java:13: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:31: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:32: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.DataProvider; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:33: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsIteratorTest.java:37: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsIteratorTest.java:38: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsTest.java:39: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsTest.java:40: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIteratorTest.java:38: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIteratorTest.java:39: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupTest.java:32: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupTest.java:33: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapperTest.java:40: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapperTest.java:41: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SummarizeUMIBaseQualitiesTest.java:27: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SummarizeUMIBaseQualitiesTest.java:30: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamplesTest.java:41: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamplesTest.java:42: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollectionTest.java:31: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollectionTest.java:38: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollectionTest.java:32: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollectionTest.java:33: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoubletsTest.java:3: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignmentsTest.java:33: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignmentsTest.java:34: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCellTest.java:32: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCellTest.java:33: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesIteratorTest.java:38: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesIteratorTest.java:39: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesTest.java:35: error: package org.testng does not exist [javac] import org.testng.Assert; [javac] ^ [javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesTest.java:36: error: package org.testng.annotations does not exist [javac] import org.testng.annotations.Test; [javac] ^ [javac] 100 errors [javac] only showing the first 100 errors, of 800 total; use -Xmaxerrs if you would like to see more BUILD FAILED /<<PKGBUILDDIR>>/build.xml:78: The following error occurred while executing this line: /<<PKGBUILDDIR>>/src/ant/defs.xml:51: Compile failed; see the compiler error output for details. Total time: 5 seconds dh_auto_build: error: ant -propertyfile ./debian/ant.properties -Duser.name debian returned exit code 1 make: *** [debian/rules:14: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
