Package: src:python-symfc Version: 1.5.4-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202510/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:python-symfc, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc * Building wheel... No `packages` or `py_modules` configuration, performing automatic discovery. `src-layout` detected -- analysing ./src discovered packages -- ['symfc', 'symfc.utils', 'symfc.solvers', 'symfc.basis_sets', 'symfc.spg_reps', 'symfc.utils.rotation_dev'] discovered py_modules -- [] /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running bdist_wheel running build running build_py creating build/lib/symfc copying src/symfc/__init__.py -> build/lib/symfc copying src/symfc/version.py -> build/lib/symfc copying src/symfc/api_symfc.py -> build/lib/symfc creating build/lib/symfc/utils copying src/symfc/utils/__init__.py -> build/lib/symfc/utils copying src/symfc/utils/rotation_tools_O2.py -> build/lib/symfc/utils copying src/symfc/utils/translation_tools_O4.py -> build/lib/symfc/utils copying src/symfc/utils/translation_tools_O2.py -> build/lib/symfc/utils copying src/symfc/utils/permutation_tools_O2.py -> build/lib/symfc/utils copying src/symfc/utils/permutation_tools_O4.py -> build/lib/symfc/utils copying src/symfc/utils/cutoff_tools.py -> build/lib/symfc/utils copying src/symfc/utils/matrix.py -> build/lib/symfc/utils copying src/symfc/utils/eig_tools.py -> build/lib/symfc/utils copying src/symfc/utils/utils_O3.py -> build/lib/symfc/utils copying src/symfc/utils/graph.py -> build/lib/symfc/utils copying src/symfc/utils/translation_tools_O3.py -> build/lib/symfc/utils copying src/symfc/utils/utils_O2.py -> build/lib/symfc/utils copying src/symfc/utils/translation_tools_O1.py -> build/lib/symfc/utils copying src/symfc/utils/solver_funcs.py -> build/lib/symfc/utils copying src/symfc/utils/utils_O1.py -> build/lib/symfc/utils copying src/symfc/utils/utils_O4.py -> build/lib/symfc/utils copying src/symfc/utils/utils.py -> build/lib/symfc/utils copying src/symfc/utils/permutation_tools_O3.py -> build/lib/symfc/utils copying src/symfc/utils/permutation_tools.py -> build/lib/symfc/utils creating build/lib/symfc/solvers copying src/symfc/solvers/solver_O3O4.py -> build/lib/symfc/solvers copying src/symfc/solvers/solver_O2O3O4.py -> build/lib/symfc/solvers copying src/symfc/solvers/solver_O4.py -> build/lib/symfc/solvers copying src/symfc/solvers/__init__.py -> build/lib/symfc/solvers copying src/symfc/solvers/solver_O2O3.py -> build/lib/symfc/solvers copying src/symfc/solvers/solver_O2.py -> build/lib/symfc/solvers copying src/symfc/solvers/solver_O3.py -> build/lib/symfc/solvers copying src/symfc/solvers/solver_base.py -> build/lib/symfc/solvers creating build/lib/symfc/basis_sets copying src/symfc/basis_sets/__init__.py -> build/lib/symfc/basis_sets copying src/symfc/basis_sets/basis_sets_O3.py -> build/lib/symfc/basis_sets copying src/symfc/basis_sets/basis_sets_O4.py -> build/lib/symfc/basis_sets copying src/symfc/basis_sets/basis_sets_base.py -> build/lib/symfc/basis_sets copying src/symfc/basis_sets/basis_sets_O2.py -> build/lib/symfc/basis_sets copying src/symfc/basis_sets/basis_sets_O1.py -> build/lib/symfc/basis_sets creating build/lib/symfc/spg_reps copying src/symfc/spg_reps/spg_reps_O4.py -> build/lib/symfc/spg_reps copying src/symfc/spg_reps/__init__.py -> build/lib/symfc/spg_reps copying src/symfc/spg_reps/spg_reps_base.py -> build/lib/symfc/spg_reps copying src/symfc/spg_reps/spg_reps_O3.py -> build/lib/symfc/spg_reps copying src/symfc/spg_reps/spg_reps_O2.py -> build/lib/symfc/spg_reps copying src/symfc/spg_reps/spg_reps_O1.py -> build/lib/symfc/spg_reps creating build/lib/symfc/utils/rotation_dev copying src/symfc/utils/rotation_dev/run_rotation_tools_O2.py -> build/lib/symfc/utils/rotation_dev copying src/symfc/utils/rotation_dev/__init__.py -> build/lib/symfc/utils/rotation_dev copying src/symfc/utils/rotation_dev/run_rotation_tools_O3.py -> build/lib/symfc/utils/rotation_dev copying src/symfc/utils/rotation_dev/run_test_O2.py -> build/lib/symfc/utils/rotation_dev running egg_info creating src/symfc.egg-info writing src/symfc.egg-info/PKG-INFO writing dependency_links to src/symfc.egg-info/dependency_links.txt writing requirements to src/symfc.egg-info/requires.txt writing top-level names to src/symfc.egg-info/top_level.txt writing manifest file 'src/symfc.egg-info/SOURCES.txt' reading manifest file 'src/symfc.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/symfc.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/symfc copying build/lib/symfc/__init__.py -> build/bdist.linux-x86_64/wheel/./symfc copying build/lib/symfc/version.py -> build/bdist.linux-x86_64/wheel/./symfc creating build/bdist.linux-x86_64/wheel/symfc/utils copying build/lib/symfc/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/rotation_tools_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/translation_tools_O4.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/translation_tools_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/utils creating build/bdist.linux-x86_64/wheel/symfc/utils/rotation_dev copying build/lib/symfc/utils/rotation_dev/run_rotation_tools_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev copying build/lib/symfc/utils/rotation_dev/__init__.py -> build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev copying build/lib/symfc/utils/rotation_dev/run_rotation_tools_O3.py -> build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev copying build/lib/symfc/utils/rotation_dev/run_test_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev copying build/lib/symfc/utils/permutation_tools_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/permutation_tools_O4.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/cutoff_tools.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/matrix.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/eig_tools.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/utils_O3.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/graph.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/translation_tools_O3.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/utils_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/translation_tools_O1.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/solver_funcs.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/utils_O1.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/utils_O4.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/utils.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/permutation_tools_O3.py -> build/bdist.linux-x86_64/wheel/./symfc/utils copying build/lib/symfc/utils/permutation_tools.py -> build/bdist.linux-x86_64/wheel/./symfc/utils creating build/bdist.linux-x86_64/wheel/symfc/solvers copying build/lib/symfc/solvers/solver_O3O4.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers copying build/lib/symfc/solvers/solver_O2O3O4.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers copying build/lib/symfc/solvers/solver_O4.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers copying build/lib/symfc/solvers/__init__.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers copying build/lib/symfc/solvers/solver_O2O3.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers copying build/lib/symfc/solvers/solver_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers copying build/lib/symfc/solvers/solver_O3.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers copying build/lib/symfc/solvers/solver_base.py -> build/bdist.linux-x86_64/wheel/./symfc/solvers creating build/bdist.linux-x86_64/wheel/symfc/basis_sets copying build/lib/symfc/basis_sets/__init__.py -> build/bdist.linux-x86_64/wheel/./symfc/basis_sets copying build/lib/symfc/basis_sets/basis_sets_O3.py -> build/bdist.linux-x86_64/wheel/./symfc/basis_sets copying build/lib/symfc/basis_sets/basis_sets_O4.py -> build/bdist.linux-x86_64/wheel/./symfc/basis_sets copying build/lib/symfc/basis_sets/basis_sets_base.py -> build/bdist.linux-x86_64/wheel/./symfc/basis_sets copying build/lib/symfc/basis_sets/basis_sets_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/basis_sets copying build/lib/symfc/basis_sets/basis_sets_O1.py -> build/bdist.linux-x86_64/wheel/./symfc/basis_sets creating build/bdist.linux-x86_64/wheel/symfc/spg_reps copying build/lib/symfc/spg_reps/spg_reps_O4.py -> build/bdist.linux-x86_64/wheel/./symfc/spg_reps copying build/lib/symfc/spg_reps/__init__.py -> build/bdist.linux-x86_64/wheel/./symfc/spg_reps copying build/lib/symfc/spg_reps/spg_reps_base.py -> build/bdist.linux-x86_64/wheel/./symfc/spg_reps copying build/lib/symfc/spg_reps/spg_reps_O3.py -> build/bdist.linux-x86_64/wheel/./symfc/spg_reps copying build/lib/symfc/spg_reps/spg_reps_O2.py -> build/bdist.linux-x86_64/wheel/./symfc/spg_reps copying build/lib/symfc/spg_reps/spg_reps_O1.py -> build/bdist.linux-x86_64/wheel/./symfc/spg_reps copying build/lib/symfc/api_symfc.py -> build/bdist.linux-x86_64/wheel/./symfc running install_egg_info Copying src/symfc.egg-info to build/bdist.linux-x86_64/wheel/./symfc-1.5.4.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/symfc-1.5.4.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/.tmp-qq8oepc2/symfc-1.5.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'symfc/__init__.py' adding 'symfc/api_symfc.py' adding 'symfc/version.py' adding 'symfc/basis_sets/__init__.py' adding 'symfc/basis_sets/basis_sets_O1.py' adding 'symfc/basis_sets/basis_sets_O2.py' adding 'symfc/basis_sets/basis_sets_O3.py' adding 'symfc/basis_sets/basis_sets_O4.py' adding 'symfc/basis_sets/basis_sets_base.py' adding 'symfc/solvers/__init__.py' adding 'symfc/solvers/solver_O2.py' adding 'symfc/solvers/solver_O2O3.py' adding 'symfc/solvers/solver_O2O3O4.py' adding 'symfc/solvers/solver_O3.py' adding 'symfc/solvers/solver_O3O4.py' adding 'symfc/solvers/solver_O4.py' adding 'symfc/solvers/solver_base.py' adding 'symfc/spg_reps/__init__.py' adding 'symfc/spg_reps/spg_reps_O1.py' adding 'symfc/spg_reps/spg_reps_O2.py' adding 'symfc/spg_reps/spg_reps_O3.py' adding 'symfc/spg_reps/spg_reps_O4.py' adding 'symfc/spg_reps/spg_reps_base.py' adding 'symfc/utils/__init__.py' adding 'symfc/utils/cutoff_tools.py' adding 'symfc/utils/eig_tools.py' adding 'symfc/utils/graph.py' adding 'symfc/utils/matrix.py' adding 'symfc/utils/permutation_tools.py' adding 'symfc/utils/permutation_tools_O2.py' adding 'symfc/utils/permutation_tools_O3.py' adding 'symfc/utils/permutation_tools_O4.py' adding 'symfc/utils/rotation_tools_O2.py' adding 'symfc/utils/solver_funcs.py' adding 'symfc/utils/translation_tools_O1.py' adding 'symfc/utils/translation_tools_O2.py' adding 'symfc/utils/translation_tools_O3.py' adding 'symfc/utils/translation_tools_O4.py' adding 'symfc/utils/utils.py' adding 'symfc/utils/utils_O1.py' adding 'symfc/utils/utils_O2.py' adding 'symfc/utils/utils_O3.py' adding 'symfc/utils/utils_O4.py' adding 'symfc/utils/rotation_dev/__init__.py' adding 'symfc/utils/rotation_dev/run_rotation_tools_O2.py' adding 'symfc/utils/rotation_dev/run_rotation_tools_O3.py' adding 'symfc/utils/rotation_dev/run_test_O2.py' adding 'symfc-1.5.4.dist-info/licenses/LICENSE' adding 'symfc-1.5.4.dist-info/METADATA' adding 'symfc-1.5.4.dist-info/WHEEL' adding 'symfc-1.5.4.dist-info/top_level.txt' adding 'symfc-1.5.4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built symfc-1.5.4-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 72 items tests/basis_sets/test_basis_sets_O2.py F......... [ 13%] tests/basis_sets/test_basis_sets_O3.py ..... [ 20%] tests/basis_sets/test_basis_sets_O4.py ... [ 25%] tests/basis_sets/test_basis_sets_base.py . [ 26%] tests/solvers/test_solver_utils.py ... [ 30%] tests/spg_reps/test_spg_reps_O1.py .. [ 33%] tests/spg_reps/test_spg_reps_O2.py . [ 34%] tests/spg_reps/test_spg_reps_O3.py . [ 36%] tests/spg_reps/test_spg_reps_O4.py . [ 37%] tests/spg_reps/test_spg_reps_base.py .. [ 40%] tests/test_api.py .......... [ 54%] tests/test_api_linalg.py . [ 55%] tests/utils/test_block_tree.py . [ 56%] tests/utils/test_cutoff_tools.py .. [ 59%] tests/utils/test_eig_tools.py ... [ 63%] tests/utils/test_graph.py . [ 65%] tests/utils/test_permutation_tools_O2.py .. [ 68%] tests/utils/test_permutation_tools_O3.py .. [ 70%] tests/utils/test_permutation_tools_O4.py . [ 72%] tests/utils/test_solver_funcs.py .. [ 75%] tests/utils/test_translation_tools_O2.py . [ 76%] tests/utils/test_translation_tools_O3.py . [ 77%] tests/utils/test_utils.py ...... [ 86%] tests/utils/test_utils_O1.py . [ 87%] tests/utils/test_utils_O2.py .... [ 93%] tests/utils/test_utils_O2_2.py .. [ 95%] tests/utils/test_utils_O3.py .. [ 98%] tests/utils/test_utils_O4.py . [100%] =================================== FAILURES =================================== _____________________________ test_fc_basis_set_o2 _____________________________ def test_fc_basis_set_o2(): """Test symmetry adapted basis sets of FCBasisSetO2.""" lattice = np.array([[2, 0, 0], [0, 2, 0], [0, 0, 2]]) positions = np.array([[0, 0, 0], [0.5, 0.5, 0.5]]) numbers = [1, 1] supercell = SymfcAtoms(cell=lattice, scaled_positions=positions, numbers=numbers) sbs = FCBasisSetO2(supercell, log_level=1).run() np.testing.assert_allclose( np.sort(sbs.basis_set), [[-np.sqrt(2) / 2], [np.sqrt(2) / 2]] ) comp_mat = sbs.compression_matrix > np.testing.assert_allclose(comp_mat.data, [0.40824829046386313] * > comp_mat.size) E AssertionError: E Not equal to tolerance rtol=1e-07, atol=0 E E Mismatched elements: 12 / 12 (100%) E Max absolute difference among violations: 0.81649658 E Max relative difference among violations: 2. E ACTUAL: array([-0.408248, -0.408248, -0.408248, -0.408248, -0.408248, -0.408248, E -0.408248, -0.408248, -0.408248, -0.408248, -0.408248, -0.408248]) E DESIRED: array([0.408248, 0.408248, 0.408248, 0.408248, 0.408248, 0.408248, E 0.408248, 0.408248, 0.408248, 0.408248, 0.408248, 0.408248]) tests/basis_sets/test_basis_sets_O2.py:30: AssertionError ----------------------------- Captured stdout call ----------------------------- Permutation basis: 6/6 Permutation basis: 12/12 Construct permutation basis matrix. Finding block diagonal structure in projector. Using scipy connected_components. Rank of projector: 2 Number of blocks in projector: 2 Finding block diagonal structure in projector. Using scipy connected_components. Number of blocks in projector (Sum rule): 1 --- Eigsh_solver_block: 1 / 1 --- Block_size: 2 Use standard eigh solver. Tree of FC basis block matrices: - (2, 1), data: False |-- (2, 1), data: True =========================== short test summary info ============================ FAILED tests/basis_sets/test_basis_sets_O2.py::test_fc_basis_set_o2 - Asserti... ======================== 1 failed, 71 passed in 17.06s ========================= E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/build; python3.13 -m pytest tests dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13 make: *** [debian/rules:6: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
