Source: biosquid
Version: 1.9g+cvs20050121-15.1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: nocheck
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0], we noticed that
biosquid could not be built reproducibly.
This is because the package varies depending (I think!) on whether the
tests are run or not:
│ │ │ │ @@ -46,23 +46,23 @@
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 3271 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Formats/stockholm.1
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 21572 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Formats/stockholm.2
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 16663 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Formats/swissprot
│ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 1000 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/00README
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 1802 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/Makefile
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 1821 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/Makefile.in
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 921 2024-02-28
18:29:54.000000
./usr/share/doc/libsquid-dev/examples/Testsuite/bug-1-sfetch-paths
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 921 2024-02-28
18:29:54.000000
./usr/share/doc/libsquid-dev/examples/Testsuite/bug-1-sfetch-paths
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 286 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/exercises.sqc
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 1898 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/iospeed_main.c
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 673 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/rndspeed_main.c
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 710 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/sqdconfig_main.c
│ │ │ │ -rw-r--r-- 0 root (0) root (0) 865 2006-07-30
21:39:11.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/testsuite.pm
│ │ │ │ -rwxr-xr-x 0 root (0) root (0) 1572 2006-07-30
21:39:11.000000
./usr/share/doc/libsquid-dev/examples/Testsuite/translate-test.pl
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 370 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-afetch
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 654 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-alistat
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 1174 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-seqstat
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 336 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-sfetch
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 199 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-shuffle
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 542 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-sindex
│ │ │ │ --rwxr-xr-x 0 root (0) root (0) 663 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-sreformat
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 370 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-afetch
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 654 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-alistat
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 1174 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-seqstat
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 336 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-sfetch
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 199 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-shuffle
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 542 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-sindex
│ │ │ │ +-rw-r--r-- 0 root (0) root (0) 663 2024-02-28
18:29:54.000000 ./usr/share/doc/libsquid-dev/examples/Testsuite/x-base-sreformat
Patch attached that normalises the permissions of these examples.
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/rules 2025-11-07 14:41:11.757255978 -0800
--- b/debian/rules 2025-11-07 14:51:21.415104610 -0800
@@ -53,6 +53,7 @@
done
override_dh_installexamples:
+ chmod 644 Testsuite/*
dh_installexamples
cd
$(CURDIR)/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite;
make clean
sed -i 's#/usr/local/bin/perl#/usr/bin/perl#'
$(CURDIR)/debian/$(LIBNAME)-dev/usr/share/doc/$(LIBNAME)-dev/examples/Formats/*.pl
