Source: r-cran-mice Version: 3.17.0-1 Severity: serious X-Debbugs-CC: [email protected] Tags: sid forky User: [email protected] Usertags: needs-update Control: affects -1 src:lme4
Dear maintainer(s),With a recent upload of lme4 the autopkgtest of r-cran-mice fails in testing when that autopkgtest is run with the binary packages of lme4 from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
lme4 from testing 1.1-38-1
r-cran-mice from testing 3.17.0-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of lme4 to testing
[1]. Of course, lme4 shouldn't just break your autopkgtest (or even
worse, your package), but it is my understanding that the r ecosystem
does good testing itself and r-cran-mice is outdated, so I'm suspecting
the issue lies with r-cran-mice.
If this is a real problem in your package (and not only in your autopkgtest), the right binary package(s) from lme4 could add a versioned Breaks on the unfixed version of (one of your) package(s). Note: the Breaks is nice even if the issue is only in the autopkgtest as it helps the migration software to figure out the right versions to combine in the tests.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=lme4 https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-mice/67653839/log.gz 65s BEGIN TEST testthat.R 65s 65s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 65s Copyright (C) 2025 The R Foundation for Statistical Computing 65s Platform: x86_64-pc-linux-gnu 65s 65s R is free software and comes with ABSOLUTELY NO WARRANTY. 65s You are welcome to redistribute it under certain conditions. 65s Type 'license()' or 'licence()' for distribution details. 65s 65s R is a collaborative project with many contributors. 65s Type 'contributors()' for more information and 65s 'citation()' on how to cite R or R packages in publications. 65s 65s Type 'demo()' for some demos, 'help()' for on-line help, or 65s 'help.start()' for an HTML browser interface to help. 65s Type 'q()' to quit R. 65s 65s > library(testthat) 65s > library(mice) 66s 66s Attaching package: ‘mice’ 66s 66s The following object is masked from ‘package:stats’: 66s 66s filter 66s 66s The following objects are masked from ‘package:base’: 66s 66s cbind, rbind 66s 66s > 66s > test_check("mice") 112s [ FAIL 1 | WARN 0 | SKIP 0 | PASS 377 ]112s 112s ══ Failed tests ════════════════════════════════════════════════════════════════ 112s ── Error ('test-mice.impute.2l.bin.R:30:1'): (code run outside of `test_that()`) ──
112s Error: object 'ID' not found 112s Backtrace: 112s ▆ 112s 1. ├─... %>% dplyr::select(-month) at test-mice.impute.2l.bin.R:30:1 112s 2. ├─dplyr::select(., -month) 112s 3. ├─tidyr::fill(., treatment) 112s 4. ├─tidyr::complete(toenail, ID, visit) 112s 5. └─tidyr:::complete.data.frame(toenail, ID, visit) 112s 6. ├─tidyr::expand(data, ...) 112s 7. └─tidyr:::expand.data.frame(data, ...) 112s 8. └─tidyr:::grid_dots(..., `_data` = data) 112s 9. └─rlang::eval_tidy(dot, data = mask) 112s 112s [ FAIL 1 | WARN 0 | SKIP 0 | PASS 377 ] 112s Error: Test failures 112s Execution halted 113s autopkgtest [11:12:27]: test run-unit-test
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