Package: src:r-cran-adephylo Version: 1.1-17-2 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202601/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:r-cran-adephylo, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-adephylo/ -O--buildsystem=R I: R packages needed for DEP8: testthat I: R Package: adephylo Version: 1.1-17 I: Building using R version 4.5.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 26 Dec 2025 17:25:04 +0900 mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 26 Dec 2025 17:25:04 +0900'" * installing *source* package âadephyloâ ... ** this is package âadephyloâ version â1.1-17â ** package âadephyloâ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: âgcc (Debian 15.2.0-12) 15.2.0â make[1]: Entering directory '/<<PKGBUILDDIR>>/src' gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c adesub.c -o adesub.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c distPhylo.c -o distPhylo.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c misc.c -o misc.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c phylog.c -o phylog.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c sptips.c -o sptips.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o adephylo.so adesub.o distPhylo.o init.o misc.o phylog.o sptips.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' make[1]: Entering directory '/<<PKGBUILDDIR>>/src' make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' installing to /<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library/00LOCK-r-cran-adephylo-1.1-17/00new/adephylo/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Error: object âloadRcppModulesâ is not exported by 'namespace:Rcpp' Execution halted ERROR: lazy loading failed for package âadephyloâ * removing â/<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library/adephyloâ dh_auto_install: error: R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library --clean . --built-timestamp="'Fri, 26 Dec 2025 17:25:04 +0900'" returned exit code 1 make: *** [debian/rules:4: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
