Hi, Attached is the diff for my python-biopython 1.41-2.1 NMU.
-- ·O· Pierre Habouzit ··O [EMAIL PROTECTED] OOO http://www.madism.org
diff -u python-biopython-1.41/debian/control
python-biopython-1.41/debian/control
--- python-biopython-1.41/debian/control
+++ python-biopython-1.41/debian/control
@@ -3,12 +3,20 @@
Section: python
Maintainer: Philipp Benner <[EMAIL PROTECTED]>
Uploaders: Andreas Tille <[EMAIL PROTECTED]>
-Build-Depends: debhelper (>= 4.0.0), flex, python, python-dev, python2.3,
python2.3-dev, python2.3-egenix-mxtexttools, python2.3-reportlab,
python2.3-numeric, python2.4, python2.4-dev, python2.4-egenix-mxtexttools,
python2.4-reportlab, python2.4-numeric
-Standards-Version: 3.6.2
+Build-Depends: debhelper (>= 5.0.37.2), python-all-dev (>= 2.3.5-11), flex,
+ python-support (>= 0.3), python-egenix-mxtexttools, python-reportlab,
+ python-numeric
+Standards-Version: 3.7.2
Package: python-biopython
-Architecture: all
-Depends: ${python:Depends}, python-biopython-martel (>= 1.41),
python-reportlab, python-egenix-mxtexttools, python-numeric
+Architecture: any
+Depends: ${python:Depends}, ${shlibs:Depends}, python-numeric,
+ python-biopython-martel (>= 1.41), python-reportlab,
+ python-egenix-mxtexttools
+Provides: ${python:Provides}
+Replaces: python2.3-biopython (<< 1.41-2.1), python2.4-biopython (<< 1.41-2.1)
+Conflicts: python2.3-biopython (<< 1.41-2.1), python2.4-biopython (<< 1.41-2.1)
+XB-Python-Version: ${python:Versions}
Suggests: python-numeric-ext
Description: Python library for bioinformatics
The Biopython Project is an international association
@@ -34,84 +42,22 @@
Package: python-biopython-sql
Architecture: all
-Depends: ${python:Depends}, python-mysqldb
+Depends: ${python:Depends}, python-mysqldb, python-biopython
+Provides: ${python:Provides}
+Replaces: python2.3-biopython-sql (<< 1.41-2.1), python2.4-biopython-sql (<<
1.41-2.1)
+Conflicts: python2.3-biopython-sql (<< 1.41-2.1), python2.4-biopython-sql (<<
1.41-2.1)
+XB-Python-Version: ${python:Versions}
Description: SQL support for the Biopython library
This is the python2.2 version of the Biopython-SQL
library which provides support for SQL.
Package: python-biopython-martel
Architecture: all
-Depends: ${python:Depends}
-Description: Flat file parser for the Biopython library
- Martel uses regular expression format definition to generate
- a parser for flat- and semi-structured files.
- The parse tree information is passed back to the caller using
- XML SAX events. In other words, Martel lets you parse flat
- files as if they are in XML.
-
-Package: python2.3-biopython
-Architecture: any
-Depends: ${python:Depends}, ${shlibs:Depends}, python2.3-biopython-martel (>=
1.41), python2.3-reportlab, python2.3-egenix-mxtexttools, python2.3-numeric
-Suggests: python-numeric-ext
-Description: Python library for bioinformatics
- The Biopython Project is an international association
- of developers of freely available Python tools for
- computational molecular biology.
- .
- It is a distributed collaborative effort to develop Python
- libraries and applications which address the needs of
- current and future work in bioinformatics. The source code
- is made available under the Biopython License, which is
- extremely liberal and compatible with almost every license
- in the world. We work along with the Open Bioinformatics
- Foundation, who generously provide web and CVS space for
- the project.
-
-Package: python2.3-biopython-sql
-Architecture: all
-Depends: ${python:Depends}, python2.3-mysqldb, python2.3-biopython
-Description: SQL support for the Biopython library
- This is the python2.3 version of the Biopython-SQL
- library which provides support for SQL.
-
-Package: python2.3-biopython-martel
-Architecture: all
-Depends: ${python:Depends}, python2.3-biopython
-Description: Flat file parser for the Biopython library
- Martel uses regular expression format definition to generate
- a parser for flat- and semi-structured files.
- The parse tree information is passed back to the caller using
- XML SAX events. In other words, Martel lets you parse flat
- files as if they are in XML.
-
-Package: python2.4-biopython
-Architecture: any
-Depends: ${python:Depends}, ${shlibs:Depends}, python2.4-biopython-martel (>=
1.41), python2.4-reportlab, python2.4-egenix-mxtexttools, python2.4-numeric
-Suggests: python-numeric-ext
-Description: Python library for bioinformatics
- The Biopython Project is an international association
- of developers of freely available Python tools for
- computational molecular biology.
- .
- It is a distributed collaborative effort to develop Python
- libraries and applications which address the needs of
- current and future work in bioinformatics. The source code
- is made available under the Biopython License, which is
- extremely liberal and compatible with almost every license
- in the world. We work along with the Open Bioinformatics
- Foundation, who generously provide web and CVS space for
- the project.
-
-Package: python2.4-biopython-sql
-Architecture: all
-Depends: ${python:Depends}, python2.4-mysqldb, python2.4-biopython
-Description: SQL support for the Biopython library
- This is the python2.3 version of the Biopython-SQL
- library which provides support for SQL.
-
-Package: python2.4-biopython-martel
-Architecture: all
-Depends: ${python:Depends}, python2.4-biopython
+Depends: ${python:Depends}, python-biopython
+Provides: ${python:Provides}
+Replaces: python2.3-biopython-martel (<< 1.41-2.1), python2.4-biopython-martel
(<< 1.41-2.1)
+Conflicts: python2.3-biopython-martel (<< 1.41-2.1),
python2.4-biopython-martel (<< 1.41-2.1)
+XB-Python-Version: ${python:Versions}
Description: Flat file parser for the Biopython library
Martel uses regular expression format definition to generate
a parser for flat- and semi-structured files.
diff -u python-biopython-1.41/debian/rules python-biopython-1.41/debian/rules
--- python-biopython-1.41/debian/rules
+++ python-biopython-1.41/debian/rules
@@ -1,16 +1,16 @@
#!/usr/bin/make -f
PWD := $(shell pwd)
-PYVERS = 2.3 2.4
+PYVERS := $(shell pyversions -r)
build: build-stamp
-build-stamp: $(PYVERS:%=build-python%)
+build-stamp: $(PYVERS:%=build-%)
touch build-stamp
build-python%:
echo $(DEB_HOST_ARCH)
python$* setup.py build
-install: $(PYVERS:%=install-python%)
+install: $(PYVERS:%=install-%)
install-python%:
dh_testdir
dh_testroot
@@ -27,12 +27,12 @@
done
# </bugfix>
- dh_movefiles -ppython$*-biopython \
- -ppython$*-biopython-sql \
- -ppython$*-biopython-martel \
+ dh_movefiles -ppython-biopython \
+ -ppython-biopython-sql \
+ -ppython-biopython-martel \
--sourcedir=debian/python$*-tmp
-clean: $(PYVERS:%=clean-python%)
+clean: $(PYVERS:%=clean-%)
dh_testdir
dh_testroot
@@ -63,6 +63,7 @@
dh_installchangelogs -i
dh_fixperms -i
dh_compress -i
+ dh_pysupport -i
dh_python -i
dh_gencontrol -i
dh_md5sums -i
@@ -80,6 +81,7 @@
ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
dh_strip -a
endif
+ dh_pysupport -a
dh_python -a
dh_shlibdeps -a
dh_gencontrol -a
reverted:
--- python-biopython-1.41/debian/python2.4-biopython-sql.files
+++ python-biopython-1.41.orig/debian/python2.4-biopython-sql.files
@@ -1 +0,0 @@
-usr/lib/python2.4/site-packages/BioSQL
reverted:
--- python-biopython-1.41/debian/python2.4-biopython-martel.files
+++ python-biopython-1.41.orig/debian/python2.4-biopython-martel.files
@@ -1 +0,0 @@
-usr/lib/python2.4/site-packages/Martel
diff -u python-biopython-1.41/debian/changelog
python-biopython-1.41/debian/changelog
--- python-biopython-1.41/debian/changelog
+++ python-biopython-1.41/debian/changelog
@@ -1,3 +1,10 @@
+python-biopython (1.41-2.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Update package to the last python policy (Closes: #373515).
+
+ -- Pierre Habouzit <[EMAIL PROTECTED]> Fri, 30 Jun 2006 13:45:39 +0200
+
python-biopython (1.41-2) unstable; urgency=low
* suggests python-numeric-ext
reverted:
--- python-biopython-1.41/debian/python2.3-biopython-martel.files
+++ python-biopython-1.41.orig/debian/python2.3-biopython-martel.files
@@ -1 +0,0 @@
-usr/lib/python2.3/site-packages/Martel
reverted:
--- python-biopython-1.41/debian/python2.3-biopython.files
+++ python-biopython-1.41.orig/debian/python2.3-biopython.files
@@ -1 +0,0 @@
-usr/lib/python2.3/site-packages/Bio
reverted:
--- python-biopython-1.41/debian/substvars
+++ python-biopython-1.41.orig/debian/substvars
@@ -1 +0,0 @@
-python:Depends=python (>= 2.3), python2.3-biopython, python (<< 2.4)
reverted:
--- python-biopython-1.41/debian/python2.4-biopython.files
+++ python-biopython-1.41.orig/debian/python2.4-biopython.files
@@ -1 +0,0 @@
-usr/lib/python2.4/site-packages/Bio
reverted:
--- python-biopython-1.41/debian/python2.3-biopython-sql.files
+++ python-biopython-1.41.orig/debian/python2.3-biopython-sql.files
@@ -1 +0,0 @@
-usr/lib/python2.3/site-packages/BioSQL
only in patch2:
unchanged:
--- python-biopython-1.41.orig/debian/python-biopython.files
+++ python-biopython-1.41/debian/python-biopython.files
@@ -0,0 +1 @@
+usr/lib/python*/site-packages/Bio
only in patch2:
unchanged:
--- python-biopython-1.41.orig/debian/python-biopython-martel.files
+++ python-biopython-1.41/debian/python-biopython-martel.files
@@ -0,0 +1 @@
+usr/lib/python*/site-packages/Martel
only in patch2:
unchanged:
--- python-biopython-1.41.orig/debian/python-biopython-sql.files
+++ python-biopython-1.41/debian/python-biopython-sql.files
@@ -0,0 +1 @@
+usr/lib/python*/site-packages/BioSQL
only in patch2:
unchanged:
--- python-biopython-1.41.orig/debian/pycompat
+++ python-biopython-1.41/debian/pycompat
@@ -0,0 +1 @@
+2
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