Package: src:r-cran-sets Version: 1.0.25+ds-2 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202606/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:r-cran-sets, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --with vignette --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --with vignette --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R debian/rules execute_before_dh_vignette make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_install I: R packages needed for DEP8: testthat I: R Package: sets Version: 1.0-25 I: Building using R version 4.6.0-5 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Wed, 11 Mar 2026 09:13:00 +0900 mkdir -p /<<BUILDDIR>>/r-cran-sets-1.0.25\+ds/debian/r-cran-sets/usr/lib/R/site-library R CMD INSTALL -l /<<BUILDDIR>>/r-cran-sets-1.0.25\+ds/debian/r-cran-sets/usr/lib/R/site-library --clean . --built-timestamp="'Wed, 11 Mar 2026 09:13:00 +0900'" * installing *source* package âsetsâ ... ** this is package âsetsâ version â1.0-25â file âinst/doc/sets.pdfâ is missing ** using staged installation ** libs using C compiler: âx86_64-linux-gnu-gcc (Debian 15.2.0-17) 15.2.0â make[2]: Entering directory '/<<PKGBUILDDIR>>/src' x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c closure.c -o closure.o x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o x86_64-linux-gnu-gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o sets.so closure.o init.o -L/usr/lib/R/lib -lR make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' make[2]: Entering directory '/<<PKGBUILDDIR>>/src' make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' installing to /<<PKGBUILDDIR>>/debian/r-cran-sets/usr/lib/R/site-library/00LOCK-r-cran-sets-1.0.25+ds/00new/sets/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sets) W: Ignoring specified R dependency: R (>= 2.7.0) I: Using r-cran-testthat for Recommends:testthat I: Using r-cran-proxy for Suggests:proxy I: Use r-cran-sets as Debian binary package for variables substitution make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_vignette -O--buildsystem=R R version 4.6.0 (2026-04-24) -- "Because it was There" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > tools::buildVignettes(dir=".", tangle=TRUE, quiet=TRUE) --- re-building âsets.Rnwâ using Sweave Attaching package: âproxyâ The following objects are masked from âpackage:statsâ: as.dist, dist The following object is masked from âpackage:baseâ: as.matrix The "ward" method has been renamed to "ward.D"; note new "ward.D2" The "ward" method has been renamed to "ward.D"; note new "ward.D2" Error: processing vignette 'sets.Rnw' failed with diagnostics: Running 'texi2dvi' on 'sets.tex' failed. LaTeX errors: ! Undefined control sequence. <argument> cite.\@citeb \@extra@b@citeb l.84 \begin{document} ! Emergency stop. <argument> cite.\@citeb \@extra@b@citeb l.84 \begin{document} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building âsets.Rnwâ SUMMARY: processing the following file failed: âsets.Rnwâ Error: Vignette re-building failed. Execution halted make: *** [debian/rules:4: binary] Error 1 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
