Source: gmtsar Version: 6.6+ds-1 Severity: important Tags: ftbfs patch -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512
Hi, During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0 currently in experimental, gmtsar FTBFS because the related m4 macro doesn't support this new major release. The attached patch fixes this issue and support both HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental. Best, _g. - -- System Information: Debian Release: 12.0 Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAmopEsUACgkQ7+hsbH/+ z4PQhggAhb8A+rjFmNBcWoNWhrpoo/WnclbhK3x0fnfXwnNfUnMJrHTWhG6yHYXE EZbJV2rwrZdL8mbkwF01MSINdJqc5L6Z0zwodVVlk75CESeGxPHFIT11Q+/mwk8E b50+y/T7MzjxDMfSldkALeBQkY/GfrsWzG254ADowDSnK1b6byKz16M+ILd+rSBO 9iHQ63S8T6+LgEYNKCtH9iznkIhOj3HBJ2R4wFvrSSNzUZeaVwpCkcUtrYGKvUKv qRZe4Bm80ljVo1NOmS1HKyemWeZVQrPvcZzxlYF4E93LD/1waF0SRkZi93uooRzP LL0nMdQd1W+K+emyhWin3Sp2eELWoA== =tKbq -----END PGP SIGNATURE-----
diff -Nru gmtsar-6.6+ds/debian/changelog gmtsar-6.6+ds/debian/changelog --- gmtsar-6.6+ds/debian/changelog 2025-10-21 08:33:29.000000000 +0200 +++ gmtsar-6.6+ds/debian/changelog 2026-05-28 14:36:01.000000000 +0200 @@ -1,3 +1,10 @@ +gmtsar (6.6+ds-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Fix FTBFS against HDF5 2.1.0 + + -- Gilles Filippini <[email protected]> Thu, 28 May 2026 14:36:01 +0200 + gmtsar (6.6+ds-1) unstable; urgency=medium [ Bas Couwenberg ] diff -Nru gmtsar-6.6+ds/debian/patches/hdf5-2.1.0.patch gmtsar-6.6+ds/debian/patches/hdf5-2.1.0.patch --- gmtsar-6.6+ds/debian/patches/hdf5-2.1.0.patch 1970-01-01 01:00:00.000000000 +0100 +++ gmtsar-6.6+ds/debian/patches/hdf5-2.1.0.patch 2026-05-28 14:36:01.000000000 +0200 @@ -0,0 +1,54 @@ +Index: gmtsar-6.6+ds/ax_lib_hdf5.m4 +=================================================================== +--- gmtsar-6.6+ds.orig/ax_lib_hdf5.m4 ++++ gmtsar-6.6+ds/ax_lib_hdf5.m4 +@@ -226,7 +226,14 @@ HDF5 support is being disabled (equivale + esac + done + +- HDF5_LIBS="$HDF5_LIBS -lhdf5" ++ HDF5_INFIX= ++ case "$HDF5_LIBS" in ++ -lhdf5_*) ++ HDF5_INFIX="${HDF5_LIBS#-lhdf5_}" ++ HDF5_INFIX="_${HDF5_INFIX%%_*}" ++ ;; ++ esac ++ HDF5_LIBS="$HDF5_LIBS -lhdf5$HDF5_INFIX" + AC_MSG_RESULT([yes (version $[HDF5_VERSION])]) + + dnl See if we can compile +@@ -245,7 +252,7 @@ HDF5 support is being disabled (equivale + AC_MSG_WARN([Unable to compile HDF5 test program]) + fi + dnl Look for HDF5's high level library +- AC_CHECK_LIB([hdf5_hl], [H5TBread_table], [HDF5_LIBS="$HDF5_LIBS -lhdf5_hl"], [], []) ++ AC_CHECK_LIB([hdf5${HDF5_INFIX}_hl], [H5TBread_table], [HDF5_LIBS="$HDF5_LIBS -lhdf5${HDF5_INFIX}_hl"], [], []) + + CC=$ax_lib_hdf5_save_CC + CPPFLAGS=$ax_lib_hdf5_save_CPPFLAGS +@@ -281,9 +288,9 @@ HDF5 support is being disabled (equivale + for arg in $HDF5_LIBS + do + case "$arg" in #( +- -lhdf5_hl) HDF5_FLIBS="$HDF5_FLIBS -lhdf5hl_fortran $arg" ++ -lhdf5${HDF5_INFIX}_hl) HDF5_FLIBS="$HDF5_FLIBS -lhdf5${HDF5_INFIX}_hl_fortran $arg" + ;; #( +- -lhdf5) HDF5_FLIBS="$HDF5_FLIBS -lhdf5_fortran $arg" ++ -lhdf5${HDF5_INFIX}) HDF5_FLIBS="$HDF5_FLIBS -lhdf5${HDF5_INFIX}_fortran $arg" + ;; #( + *) HDF5_FLIBS="$HDF5_FLIBS $arg" + ;; +Index: gmtsar-6.6+ds/configure.ac +=================================================================== +--- gmtsar-6.6+ds.orig/configure.ac ++++ gmtsar-6.6+ds/configure.ac +@@ -153,7 +153,7 @@ dnl ------------------------------------ + dnl Set the HDF5 include and lib stuff + dnl ------------------------------------------------------------------ + AX_LIB_HDF5() +-HDF5_LIBS="$HDF5_LIBS -lhdf5_cpp" # Add the C++ library ++HDF5_LIBS="$HDF5_LIBS -lhdf5${HDF5_INFIX}_cpp" # Add the C++ library + AC_MSG_CHECKING(for HDF5 include) + AC_MSG_RESULT($HDF5_CPPFLAGS) + AC_MSG_CHECKING(for HDF5 libs) diff -Nru gmtsar-6.6+ds/debian/patches/series gmtsar-6.6+ds/debian/patches/series --- gmtsar-6.6+ds/debian/patches/series 2025-10-21 08:33:29.000000000 +0200 +++ gmtsar-6.6+ds/debian/patches/series 2026-05-28 14:36:01.000000000 +0200 @@ -1,3 +1,4 @@ +hdf5-2.1.0.patch 0001-No-snaphu-and-epr-api.patch 0002-Fix-interpreter.patch 0003-Clean.patch
