Source: libtrexio Version: 2.2.3-3 Severity: important Tags: ftbfs patch -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512
Hi, During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0 currently in experimental, libtrexio FTBFS because the related m4 macro doesn't support this new major release. The attached patch fixes this issue and supports both HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental. Best, _g. - -- System Information: Debian Release: 12.0 Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAmopHNUACgkQ7+hsbH/+ z4PvhAf7Bfp1JsbXRa1u0U/L5ievtKNKro1xvqcIzww4Jwjd8hXG7eWuDOIiULkb a/yYSaEoVJ0SXPeyEXV3AH2atpK6dZobzoMn0gGXzgwLwu8jdYic9yjpEYlJc/Jn c488cn/UOFYNUJNaGx4U61xxPlm3Rxni/HI4J0PbRdmzgz4zpA+BFsUlyNXpsWZ4 7EDwaFxuX/XNV3qy8SEh3KVaZX5GBQ6A4KEJGQHxkBzThnmtKJJLd6EwJDcXJIEV h3N9WbRQHTG23SpFfec/RhSGubqMRzZoigL+T5MaBB6Pr9aAxR2IlwPfLaMctJ+B Kpczw6cVK7LT3mzX3mQU5aYNP8PzQA== =ycPp -----END PGP SIGNATURE-----
diff -Nru libtrexio-2.2.3/debian/changelog libtrexio-2.2.3/debian/changelog --- libtrexio-2.2.3/debian/changelog 2022-10-07 14:07:45.000000000 +0200 +++ libtrexio-2.2.3/debian/changelog 2026-05-29 10:11:35.000000000 +0200 @@ -1,3 +1,10 @@ +libtrexio (2.2.3-3.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Fix FTBFS against HDF5 2.1.0 + + -- Gilles Filippini <[email protected]> Fri, 29 May 2026 10:11:35 +0200 + libtrexio (2.2.3-3) unstable; urgency=medium * Team upload. diff -Nru libtrexio-2.2.3/debian/patches/hdf5-2.1.0.patch libtrexio-2.2.3/debian/patches/hdf5-2.1.0.patch --- libtrexio-2.2.3/debian/patches/hdf5-2.1.0.patch 1970-01-01 01:00:00.000000000 +0100 +++ libtrexio-2.2.3/debian/patches/hdf5-2.1.0.patch 2026-05-29 10:11:35.000000000 +0200 @@ -0,0 +1,49 @@ +Index: libtrexio-2.2.3/m4/ax_lib_hdf5.m4 +=================================================================== +--- libtrexio-2.2.3.orig/m4/ax_lib_hdf5.m4 ++++ libtrexio-2.2.3/m4/ax_lib_hdf5.m4 +@@ -237,7 +237,15 @@ HDF5 support is being disabled (equivale + esac + done + +- HDF5_LIBS="-lhdf5 $HDF5_LIBS" ++ HDF5_INFIX= ++ HDF5_LIBS="${HDF5_LIBS#"${HDF5_LIBS%%[![:space:]]*}"}" ++ case "$HDF5_LIBS" in ++ -lhdf5_*) ++ HDF5_INFIX="${HDF5_LIBS#-lhdf5_}" ++ HDF5_INFIX="_${HDF5_INFIX%%_*}" ++ ;; ++ esac ++ HDF5_LIBS="-lhdf5$HDF5_INFIX $HDF5_LIBS" + AC_MSG_RESULT([yes (version $[HDF5_VERSION])]) + + dnl See if we can compile +@@ -251,13 +259,13 @@ HDF5 support is being disabled (equivale + LIBS=$HDF5_LIBS + LDFLAGS=$HDF5_LDFLAGS + AC_CHECK_HEADER([hdf5.h], [ac_cv_hadf5_h=yes], [ac_cv_hadf5_h=no]) +- AC_CHECK_LIB([hdf5], [H5Fcreate], [ac_cv_libhdf5=yes], ++ AC_CHECK_LIB([hdf5${HDF5_INFIX}], [H5Fcreate], [ac_cv_libhdf5=yes], + [ac_cv_libhdf5=no]) + if test "$ac_cv_hadf5_h" = "no" && test "$ac_cv_libhdf5" = "no" ; then + AC_MSG_WARN([Unable to compile HDF5 test program]) + fi + dnl Look for HDF5's high level library +- AC_CHECK_LIB([hdf5_hl], [main],[HDF5_LIBS="-lhdf5_hl $HDF5_LIBS"], [], []) ++ AC_CHECK_LIB([hdf5${HDF5_INFIX}_hl], [main],[HDF5_LIBS="-lhdf5${HDF5_INFIX}_hl $HDF5_LIBS"], [], []) + + CC=$ax_lib_hdf5_save_CC + CPPFLAGS=$ax_lib_hdf5_save_CPPFLAGS +@@ -294,9 +302,9 @@ HDF5 support is being disabled (equivale + for arg in $HDF5_LIBS + do + case "$arg" in #( +- -lhdf5_hl) HDF5_FLIBS="$HDF5_FLIBS -lhdf5hl_fortran $arg" ++ -lhdf5_hl) HDF5_FLIBS="$HDF5_FLIBS -lhdf5${HDF5_INFIX}_hl_fortran $arg" + ;; #( +- -lhdf5) HDF5_FLIBS="$HDF5_FLIBS -lhdf5_fortran $arg" ++ -lhdf5) HDF5_FLIBS="$HDF5_FLIBS -lhdf5${HDF5_INFIX}_fortran $arg" + ;; #( + *) HDF5_FLIBS="$HDF5_FLIBS $arg" + ;; diff -Nru libtrexio-2.2.3/debian/patches/series libtrexio-2.2.3/debian/patches/series --- libtrexio-2.2.3/debian/patches/series 2022-10-07 14:07:38.000000000 +0200 +++ libtrexio-2.2.3/debian/patches/series 2026-05-29 10:11:35.000000000 +0200 @@ -1,2 +1,3 @@ fixParallelTests.diff fix32bitBuilds.diff +hdf5-2.1.0.patch
