Bug#1140389: transition: hdf5

Gilles Filippini Mon, 22 Jun 2026 02:35:16 -0700

Gilles Filippini a écrit le 19/06/2026 à 15:25 :

Package: release.debian.org
Severity: normal
User: [email protected]
Usertags: transition


I hereby request a transition slot for hdf5 2.1.0 currently in experimental.

Reverse dependencies status:

* 154 total reverse dependencies
* 118 checked OK
* 7 not in testing (FTBFS in unstable)
     dmrgpp                         KO # FTBFS - Not in testing
     openms                         KO # FTBFS - Not in testing
     ufo-filters                    KO # FTBFS - Not in testing
     pyhst2                         KO # FTBFS - Not in testing
     r-bioc-ioniser                 KO # FTBFS - Not in testing
     siconos                        KO # FTBFS - Not in testing
     r-bioc-gsva                    KO # FTBFS - Not in testing
* 17 bugs opened with attached patch
     gmtsar                         OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139600
     gwyddion                       OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
     h5py                           OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604
     libtrexio                      OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139605
     libvbz-hdf-plugin              OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139606
     mapsembler2                    OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607
     satdump                        OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139608
     slurm-wlm                      OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139609
     slurm-wlm-contrib              OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612
     unifrac-tools                  OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
     freefem++                      OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139617
     libminc                        OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139618
     scilab                         OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139619
     dolfin                         OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620
     cctbx                          OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140089
     insighttoolkit5                OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139623
     silx                           OK # Patch - 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139569
* 4 bugs opened with no fix yet
     haskell-hdf5                   KO # 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139497
     r-cran-hdf5r                   KO # 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139545
     silo-llnl                      KO # 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139553
     xmds2                          KO # 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139554
* 1 RM bug for a package not suitable for unstable anymore
     med-fichier                    KO 
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139324
* 7 not checked yet because of a failing build-dependency
     hkl                            KO (haskell-hdf5)
     r-bioc-rhdf5                   KO (r-bioc-rhdf5filters)
     r-bioc-hdf5array               KO (r-bioc-rhdf5)
     r-bioc-alabaster.matrix        KO (r-bioc-rhdf5)
     r-bioc-bsseq                   KO (r-bioc-rhdf5)
     r-bioc-dropletutils            KO (r-bioc-hdf5array)
     r-bioc-mofa2                   KO (r-bioc-rhdf5)

I've set the usertag "hdf5-2.1.0-transition" with user "[email protected]"
to track the related bugs.

https://bugs.debian.org/cgi-bin/[email protected];tag=hdf5-2.1.0-transition

Ben file:

title = "hdf5";
is_affected = .depends ~ /libhdf5-310|libhdf5-openmpi-310|libhdf5-mpich-310/ | 
.depends ~ /libhdf5-320|libhdf5-openmpi-320|libhdf5-mpich-320/;
is_good = .depends ~ /libhdf5-320|libhdf5-openmpi-320|libhdf5-mpich-320/;
is_bad = .depends ~ /libhdf5-310|libhdf5-openmpi-310|libhdf5-mpich-310/;


Updated reverse dependencies status:

* 154 total reverse dependencies
* 120 checked OK
* 13 not in testing (FTBFS or missing dependency)
    dmrgpp                         KO # FTBFS - Not in testing
    openms                         KO # FTBFS - Not in testing
    ufo-filters                    KO # FTBFS - Not in testing
    pyhst2                         KO # FTBFS - Not in testing
    r-bioc-rhdf5                   KO # FTBFS - Not in testing
    r-bioc-hdf5array               KO # FTBFS - Not in testing
    r-bioc-ioniser                 KO # FTBFS - Not in testing
    siconos                        KO # FTBFS - Not in testing
    r-bioc-alabaster.matrix        KO # Not in testing
    r-bioc-bsseq                   KO # Not in testing
    r-bioc-dropletutils            KO # Not in testing
    r-bioc-gsva                    KO # FTBFS - Not in testing
    r-bioc-mofa2                   KO # Not in testing
* 19 opened bugs with attached patch

* 1 bugs opened with no fix yet

xmds2 KO # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139554

* 1 RM bug for a package not suitable for unstable anymore

med-fichier KO https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139324


Best,
_g.

OpenPGP_signature.asc
Description: OpenPGP digital signature

Bug#1140389: transition: hdf5

Reply via email to