Package: toil
Version: 9.4.1-1
Severity: serious
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/toil/worker.py", line 591, in
workerScript
job._runner(
~~~~~~~~~~~^
jobGraph=None,
^^^^^^^^^^^^^^
...<2 lines>...
defer=defer,
^^^^^^^^^^^^
)
^
File "/usr/lib/python3/dist-packages/toil/job.py", line 3376, in
_runner
returnValues = self._run(jobGraph=None, fileStore=fileStore)
File "/usr/lib/python3/dist-packages/toil/job.py", line 3254, in _run
return self.run(fileStore)
~~~~~~~~^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/toil/job.py", line 3638, in run
self.evaluatePromisedRequirements()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/usr/lib/python3/dist-packages/toil/job.py", line 3626, in
evaluatePromisedRequirements
].getValue()
~~~~~~~~^^
File "/usr/lib/python3/dist-packages/toil/job.py", line 4485, in
getValue
return func(*self._args)
TypeError: 'FileID' object is not callable
-- System Information:
Debian Release: forky/sid
APT prefers unstable-debug
APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing'),
(101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 7.0.12+deb14.1-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages toil depends on:
pn cwltool <none>
ii python3 3.13.9-3+b1
ii python3-boto3 1.40.72-1
pn python3-coloredlogs <none>
pn python3-configargparse <none>
ii python3-dateutil 2.9.0-4
pn python3-dill <none>
pn python3-docker <none>
pn python3-enlighten <none>
ii python3-prompt-toolkit 3.0.52-3
ii python3-psutil 7.1.0-1
pn python3-pubsub <none>
ii python3-requests 2.32.5+dfsg-2
ii python3-ruamel.yaml 0.18.14-4
pn python3-schema-salad <none>
ii python3-typing-extensions 4.15.0-2
ii python3-urllib3 2.7.0-1
ii python3-yaml 6.0.3-1
Versions of packages toil recommends:
pn python3-galaxy-tool-util <none>
pn python3-libcloud <none>
Versions of packages toil suggests:
pn condor <none>
ii docker.io 28.5.2+dfsg4-3
ii podman 5.8.2+ds1-3
ii python3-idna 3.11-1.1
pn python3-kubernetes <none>
