Package: src:pigx-rnaseq Version: 0.1.1-3 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:pigx-rnaseq, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] [Thu Aug 13 09:35:59 2026] Finished job 48. 8 of 49 steps (16%) done [Thu Aug 13 09:36:05 2026] Error in rule check_annotation_files: jobid: 1 input: /<<PKGBUILDDIR>>/tests/sample_data/sample.fasta, /<<PKGBUILDDIR>>/tests/sample_data/sample.cdna.fasta, /<<PKGBUILDDIR>>/tests/sample_data/sample.gtf output: /<<PKGBUILDDIR>>/tests/output/input_annotation_stats.tsv log: /<<PKGBUILDDIR>>/tests/output/logs/check_annotation_files.log (check log file(s) for error details) shell: /usr/bin/Rscript --vanilla /<<PKGBUILDDIR>>/scripts//validate_input_annotation.R /<<PKGBUILDDIR>>/tests/sample_data/sample.gtf /<<PKGBUILDDIR>>/tests/sample_data/sample.cdna.fasta /<<PKGBUILDDIR>>/tests/sample_data/sample.fasta /<<PKGBUILDDIR>>/tests/output >> /<<PKGBUILDDIR>>/tests/output/logs/check_annotation_files.log 2>&1 (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: .snakemake/log/2026-08-13T093557.316311.snakemake.log ERROR: could not find report for SALMON at transcript level make[1]: *** [debian/rules:39: override_dh_auto_test] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:11: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
