Package: src:python-mhcgnomes Version: 3.38.0-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202609/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:python-mhcgnomes, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_species_strict.py:1: in <module> from mhcgnomes import Gene, Species, parse mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' ____________ ERROR collecting tests/test_species_strict_unknown.py _____________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_species_strict_unknown.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_species_strict_unknown.py:6: in <module> from mhcgnomes import ParseError, parse mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' _____________ ERROR collecting tests/test_species_yaml_cleanup.py ______________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_species_yaml_cleanup.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_species_yaml_cleanup.py:4: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' ________________ ERROR collecting tests/test_standard_format.py ________________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_standard_format.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_standard_format.py:1: in <module> from mhcgnomes import Allele mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' ___________________ ERROR collecting tests/test_supertype.py ___________________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_supertype.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_supertype.py:3: in <module> from mhcgnomes import Allele, Species, Supertype, parse mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' _____________________ ERROR collecting tests/test_swine.py _____________________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_swine.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_swine.py:7: in <module> from mhcgnomes import ( mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' ___________________ ERROR collecting tests/test_tokenize.py ____________________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_tokenize.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_tokenize.py:1: in <module> from mhcgnomes.token import Token mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' _____________ ERROR collecting tests/test_uniprot_descriptions.py ______________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_uniprot_descriptions.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_uniprot_descriptions.py:1: in <module> from mhcgnomes import Allele, parse mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' ______________ ERROR collecting tests/test_v3_15_species_genes.py ______________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_v3_15_species_genes.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_v3_15_species_genes.py:8: in <module> from mhcgnomes import Species, parse mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' ______________ ERROR collecting tests/test_v3_30_parsing_fixes.py ______________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_v3_30_parsing_fixes.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_v3_30_parsing_fixes.py:13: in <module> from mhcgnomes import Class2Locus, Gene, Pair, Species, parse mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' ____________ ERROR collecting tests/test_validate_external_names.py ____________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_validate_external_names.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_validate_external_names.py:1: in <module> from mhcgnomes.validate_external_names import fasta_names, main, validate_fasta mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' _______________ ERROR collecting tests/test_workshop_alleles.py ________________ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build/tests/test_workshop_alleles.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_workshop_alleles.py:1: in <module> from mhcgnomes import Allele, parse mhcgnomes/__init__.py:13: in <module> from .allele import Allele mhcgnomes/allele.py:17: in <module> from .data import min_first_field_widths as _MIN_FIRST_FIELD_WIDTHS mhcgnomes/data.py:15: in <module> import yaml E ModuleNotFoundError: No module named 'yaml' =========================== short test summary info ============================ ERROR tests/test_Bofr.py ERROR tests/test_allele.py ERROR tests/test_allele_aliases.py ERROR tests/test_allele_mutations.py ERROR tests/test_allele_without_gene.py ERROR tests/test_ambiguous_species_inference.py ERROR tests/test_annotations.py ERROR tests/test_bad_inputs.py ERROR tests/test_batch_species.py ERROR tests/test_batch_species_v3_10.py ERROR tests/test_batch_species_v3_23.py ERROR tests/test_birds.py ERROR tests/test_cache_safety.py ERROR tests/test_cat.py ERROR tests/test_cd1.py ERROR tests/test_cetaceans.py ERROR tests/test_chain_suffix_parsing.py ERROR tests/test_chicken.py ERROR tests/test_class2_locus.py ERROR tests/test_class2_pair.py ERROR tests/test_cli.py ERROR tests/test_cow.py ERROR tests/test_curation_metadata.py ERROR tests/test_dataframe.py ERROR tests/test_dog.py ERROR tests/test_edge_cases.py ERROR tests/test_external_data.py ERROR tests/test_fast_allele_parsing.py ERROR tests/test_fish.py ERROR tests/test_gene_class_inference.py ERROR tests/test_gene_inheritance.py ERROR tests/test_gene_properties.py ERROR tests/test_haplotype.py ERROR tests/test_heterodimers.py ERROR tests/test_horse.py ERROR tests/test_human.py ERROR tests/test_iedb_names.py ERROR tests/test_immutable_results.py ERROR tests/test_ipd_imgt_coverage.py ERROR tests/test_ipd_mhc_short_prefixes.py ERROR tests/test_mhc_class_chain.py ERROR tests/test_mhc_class_helpers.py ERROR tests/test_mhc_class_parsing.py ERROR tests/test_mhc_gene_prefix_stripping.py ERROR tests/test_mhc_prefix_stripping.py ERROR tests/test_mouse.py ERROR tests/test_mouse_qa_genes.py ERROR tests/test_netmhciipan_3_1_alleles.py ERROR tests/test_netmhcpan_3_0_alleles.py ERROR tests/test_netmhcpan_4_0_alleles.py ERROR tests/test_new_species_v3_22.py ERROR tests/test_nhp.py ERROR tests/test_nomenclature_from_literature.py ERROR tests/test_nonsense_inputs.py ERROR tests/test_normalizing_dictionary.py ERROR tests/test_normalizing_set.py ERROR tests/test_ontology_hygiene.py ERROR tests/test_paper_phrase_rejections.py ERROR tests/test_parser.py ERROR tests/test_parser_edge_cases.py ERROR tests/test_rat.py ERROR tests/test_real_world_alleles.py ERROR tests/test_reptiles_amphibians.py ERROR tests/test_result_contracts.py ERROR tests/test_saha_dft2.py ERROR tests/test_serotype.py ERROR tests/test_serotype_who_definitions.py ERROR tests/test_serotypes_from_publications.py ERROR tests/test_sheep.py ERROR tests/test_species.py ERROR tests/test_species_identity.py ERROR tests/test_species_provenance.py ERROR tests/test_species_strict.py ERROR tests/test_species_strict_unknown.py ERROR tests/test_species_yaml_cleanup.py ERROR tests/test_standard_format.py ERROR tests/test_supertype.py ERROR tests/test_swine.py ERROR tests/test_tokenize.py ERROR tests/test_uniprot_descriptions.py ERROR tests/test_v3_15_species_genes.py ERROR tests/test_v3_30_parsing_fixes.py ERROR tests/test_validate_external_names.py ERROR tests/test_workshop_alleles.py !!!!!!!!!!!!!!!!!!! Interrupted: 84 errors during collection !!!!!!!!!!!!!!!!!!! ============================== 84 errors in 8.87s ============================== E: pybuild pybuild:485: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_mhcgnomes/build; python3.14 -m pytest tests rm -fr -- /tmp/dh-xdg-rundir-AG_QO3Zy dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.14 --parallel=2 returned exit code 13 make[1]: *** [debian/rules:13: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:7: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
