Package: src:python-csb Version: 1.2.5+dfsg-10 User: [email protected] Usertags: python3.15 Tags: ftbfs, forky, sid Severity: important
Hi! While rebuilding the python related packages against the Python 3.15rc2 version we found that python-csb fails to build from source: https://debusine.debian.net/debian/r-python-python3.15/artifact/4856727/ From the log, the error seems to be: ====================================================================== ERROR: testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/numeric/__init__.py", line 109, in testRotationMatrix R2 = rotation_matrix([0, 0, 1], np.pi / 2.0) File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/numeric/__init__.py", line 155, in rotation_matrix axis = numpy.asfarray(axis) / norm(axis) ^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 778, in __getattr__ raise AttributeError( ...<3 lines>... ) AttributeError: `np.asfarray` was removed in the NumPy 2.0 release. Use `np.asarray` with a proper dtype instead. ====================================================================== ERROR: testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/bio/io/mrc/__init__.py", line 36, in testRead density = self.reader.read() File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/bio/io/mrc.py", line 248, in read array = numpy.fromstring(map_data, numpy.float32, count) ValueError: The binary mode of fromstring is removed, use frombuffer instead ====================================================================== ERROR: testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/bio/io/mrc/__init__.py", line 55, in setUp self.density = self.reader.read() ~~~~~~~~~~~~~~~~^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/bio/io/mrc.py", line 248, in read array = numpy.fromstring(map_data, numpy.float32, count) ValueError: The binary mode of fromstring is removed, use frombuffer instead ====================================================================== ERROR: testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/bio/io/mrc/__init__.py", line 55, in setUp self.density = self.reader.read() ~~~~~~~~~~~~~~~~^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/bio/io/mrc.py", line 248, in read array = numpy.fromstring(map_data, numpy.float32, count) ValueError: The binary mode of fromstring is removed, use frombuffer instead ====================================================================== ERROR: testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 899, in testFiveReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (85,) (75,) ====================================================================== ERROR: testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 909, in testFiveReplicasOffset assert(self._assertIdenticalProjTrajs(samples, swap_interval, first_swap)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (103,) (73,) ====================================================================== ERROR: testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 889, in testFourReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (125,) (105,) ====================================================================== ERROR: testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 879, in testTwoReplicas assert(self._assertIdenticalProjTrajs(samples, swap_interval)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: operands could not be broadcast together with shapes (195,) (305,) ====================================================================== ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/core/__init__.py", line 21, in runTest self.assertNotEquals(id(obj), id(copy)) ^^^^^^^^^^^^^^^^^^^^ AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'? ====================================================================== FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit with self.assertRaises(RuntimeError): ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^ AssertionError: RuntimeError not raised ====================================================================== FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-14_csb/build/csb/test/cases/core.TestEnum.testComparison) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.14_csb/build/csb/test/cases/core/__init__.py", line 73, in testComparison self.assertFalse(self.enum.C == 66) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^ AssertionError: True is not false ---------------------------------------------------------------------- Please note that while we ran into this error during the rebuild against Python 3.15, that doesn't mean that the root cause for the failure is necessarily the new Python version. Setting the severity to important for now. Once Python 3.15 is released and later added to python3-defaults, this bug will become release critical. -- Cheers, Marga
