Source: macs Version: 3.0.5-1 Severity: serious Tags: ftbfs X-Debbugs-Cc: [email protected] User: [email protected] Usertags: ppc64el
https://buildd.debian.org/status/logs.php?pkg=macs&arch=ppc64el ... =================================== FAILURES =================================== _______________ test_call_summits_keeps_right_edge_candidate[0] ________________ tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-0/test_call_summits_keeps_right_0') monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x3fff959842b0> start = 0 @pytest.mark.parametrize("start", [0, 1, 5, 9, 10, 1000]) def test_call_summits_keeps_right_edge_candidate(tmp_path, monkeypatch, start): """Regression test for the padding-coordinate mismatch in issue #747.""" signal = make_two_summit_profile() track = make_petrack_from_profile(signal, start) monkeypatch.setattr(tempfile, "tempdir", str(tmp_path)) caller = CallerFromAlignments(track, None, ctrl_d_s=[], ctrl_scaling_factor_s=[], lambda_bg=1.0) try: peaks = caller.call_peaks(["f"], [2.0], min_length=50, max_gap=100, call_summits=True) finally: caller.destroy() rows = peaks.peaks[b"chrSynthetic"] relative_summits = [row["summit"] - start for row in rows] > assert len(relative_summits) == 2 E assert 1 == 2 E + where 1 = len([236]) test/test_CallPeakUnit.py:198: AssertionError _______________ test_call_summits_keeps_right_edge_candidate[1] ________________ tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-0/test_call_summits_keeps_right_1') monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x3fffa1a8c3b0> start = 1 @pytest.mark.parametrize("start", [0, 1, 5, 9, 10, 1000]) def test_call_summits_keeps_right_edge_candidate(tmp_path, monkeypatch, start): """Regression test for the padding-coordinate mismatch in issue #747.""" signal = make_two_summit_profile() track = make_petrack_from_profile(signal, start) monkeypatch.setattr(tempfile, "tempdir", str(tmp_path)) caller = CallerFromAlignments(track, None, ctrl_d_s=[], ctrl_scaling_factor_s=[], lambda_bg=1.0) try: peaks = caller.call_peaks(["f"], [2.0], min_length=50, max_gap=100, call_summits=True) finally: caller.destroy() rows = peaks.peaks[b"chrSynthetic"] relative_summits = [row["summit"] - start for row in rows] > assert len(relative_summits) == 2 E assert 1 == 2 E + where 1 = len([236]) test/test_CallPeakUnit.py:198: AssertionError _______________ test_call_summits_keeps_right_edge_candidate[5] ________________ tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-0/test_call_summits_keeps_right_2') monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x3fff95c046b0> start = 5 @pytest.mark.parametrize("start", [0, 1, 5, 9, 10, 1000]) def test_call_summits_keeps_right_edge_candidate(tmp_path, monkeypatch, start): """Regression test for the padding-coordinate mismatch in issue #747.""" signal = make_two_summit_profile() track = make_petrack_from_profile(signal, start) monkeypatch.setattr(tempfile, "tempdir", str(tmp_path)) caller = CallerFromAlignments(track, None, ctrl_d_s=[], ctrl_scaling_factor_s=[], lambda_bg=1.0) try: peaks = caller.call_peaks(["f"], [2.0], min_length=50, max_gap=100, call_summits=True) finally: caller.destroy() rows = peaks.peaks[b"chrSynthetic"] relative_summits = [row["summit"] - start for row in rows] > assert len(relative_summits) == 2 E assert 1 == 2 E + where 1 = len([236]) test/test_CallPeakUnit.py:198: AssertionError _______________ test_call_summits_keeps_right_edge_candidate[9] ________________ tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-0/test_call_summits_keeps_right_3') monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x3fff95c04af0> start = 9 @pytest.mark.parametrize("start", [0, 1, 5, 9, 10, 1000]) def test_call_summits_keeps_right_edge_candidate(tmp_path, monkeypatch, start): """Regression test for the padding-coordinate mismatch in issue #747.""" signal = make_two_summit_profile() track = make_petrack_from_profile(signal, start) monkeypatch.setattr(tempfile, "tempdir", str(tmp_path)) caller = CallerFromAlignments(track, None, ctrl_d_s=[], ctrl_scaling_factor_s=[], lambda_bg=1.0) try: peaks = caller.call_peaks(["f"], [2.0], min_length=50, max_gap=100, call_summits=True) finally: caller.destroy() rows = peaks.peaks[b"chrSynthetic"] relative_summits = [row["summit"] - start for row in rows] > assert len(relative_summits) == 2 E assert 1 == 2 E + where 1 = len([236]) test/test_CallPeakUnit.py:198: AssertionError _______________ test_call_summits_keeps_right_edge_candidate[10] _______________ tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-0/test_call_summits_keeps_right_4') monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x3fff95c16250> start = 10 @pytest.mark.parametrize("start", [0, 1, 5, 9, 10, 1000]) def test_call_summits_keeps_right_edge_candidate(tmp_path, monkeypatch, start): """Regression test for the padding-coordinate mismatch in issue #747.""" signal = make_two_summit_profile() track = make_petrack_from_profile(signal, start) monkeypatch.setattr(tempfile, "tempdir", str(tmp_path)) caller = CallerFromAlignments(track, None, ctrl_d_s=[], ctrl_scaling_factor_s=[], lambda_bg=1.0) try: peaks = caller.call_peaks(["f"], [2.0], min_length=50, max_gap=100, call_summits=True) finally: caller.destroy() rows = peaks.peaks[b"chrSynthetic"] relative_summits = [row["summit"] - start for row in rows] > assert len(relative_summits) == 2 E assert 1 == 2 E + where 1 = len([236]) test/test_CallPeakUnit.py:198: AssertionError ______________ test_call_summits_keeps_right_edge_candidate[1000] ______________ tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-0/test_call_summits_keeps_right_5') monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x3fff95c16950> start = 1000 @pytest.mark.parametrize("start", [0, 1, 5, 9, 10, 1000]) def test_call_summits_keeps_right_edge_candidate(tmp_path, monkeypatch, start): """Regression test for the padding-coordinate mismatch in issue #747.""" signal = make_two_summit_profile() track = make_petrack_from_profile(signal, start) monkeypatch.setattr(tempfile, "tempdir", str(tmp_path)) caller = CallerFromAlignments(track, None, ctrl_d_s=[], ctrl_scaling_factor_s=[], lambda_bg=1.0) try: peaks = caller.call_peaks(["f"], [2.0], min_length=50, max_gap=100, call_summits=True) finally: caller.destroy() rows = peaks.peaks[b"chrSynthetic"] relative_summits = [row["summit"] - start for row in rows] > assert len(relative_summits) == 2 E assert 1 == 2 E + where 1 = len([236]) test/test_CallPeakUnit.py:198: AssertionError ________ Test_ScoreTrackII.test_call_summits_keeps_right_edge_candidate ________ self = <test_ScoreTrack.Test_ScoreTrackII testMethod=test_call_summits_keeps_right_edge_candidate> def test_call_summits_keeps_right_edge_candidate(self): """ScoreTrackII uses the same corrected coordinates as callpeak.""" signal = make_two_summit_profile() for start in (0, 1, 5, 9, 10, 1000): score_track = make_score_track_from_profile(signal, start) peaks = score_track.call_peaks(cutoff=2, min_length=50, max_gap=100, call_summits=True) rows = peaks.peaks[b"chrSynthetic"] relative_summits = [row["summit"] - start for row in rows] > self.assertEqual(len(relative_summits), 2) E AssertionError: 1 != 2 test/test_ScoreTrack.py:293: AssertionError =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/anndata/_core/extensions.py:10 /usr/lib/python3/dist-packages/anndata/_core/extensions.py:10: DeprecationWarning: The decorator_name argument is deprecated and will be removed in the future. register_anndata_namespace = make_register_namespace_decorator( ../../../../../../usr/lib/python3/dist-packages/anndata/_core/extensions.py:10 /usr/lib/python3/dist-packages/anndata/_core/extensions.py:10: DeprecationWarning: The docstring_style argument is deprecated and will be removed in the future. register_anndata_namespace = make_register_namespace_decorator( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED test/test_CallPeakUnit.py::test_call_summits_keeps_right_edge_candidate[0] FAILED test/test_CallPeakUnit.py::test_call_summits_keeps_right_edge_candidate[1] FAILED test/test_CallPeakUnit.py::test_call_summits_keeps_right_edge_candidate[5] FAILED test/test_CallPeakUnit.py::test_call_summits_keeps_right_edge_candidate[9] FAILED test/test_CallPeakUnit.py::test_call_summits_keeps_right_edge_candidate[10] FAILED test/test_CallPeakUnit.py::test_call_summits_keeps_right_edge_candidate[1000] FAILED test/test_ScoreTrack.py::Test_ScoreTrackII::test_call_summits_keeps_right_edge_candidate ============ 7 failed, 110 passed, 4 skipped, 2 warnings in 31.46s ============= E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /build/reproducible-path/macs-3.0.5/.pybuild/cpython3_3.14_MACS3/build; python3.14 -m pytest test dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.14 --parallel=8 returned exit code 13 make[1]: *** [debian/rules:42: override_dh_auto_test] Error 25
