Source: kallisto Version: 0.52.0+dfsg-1 Severity: serious X-Debbugs-Cc: [email protected] User: [email protected] Usertags: s390x
https://tracker.debian.org/pkg/kallisto Migration status for kallisto (- to 0.52.0+dfsg-1): BLOCKED: Rejected/violates migration policy/introduces a regression Issues preventing migration: ∙ ∙ Autopkgtest for kallisto/0.52.0+dfsg-1: amd64: Pass, arm64: Pass, loong64: Pass, ppc64el: Pass, s390x: Failed ♻ ... 73s autopkgtest [07:33:29]: test run-unit-test: [----------------------- 73s 73s [build] loading fasta file transcripts.fasta.gz 73s [build] k-mer length: 31 73s KmerStream::KmerStream(): Start computing k-mer cardinality estimations (1/2) 73s KmerStream::KmerStream(): Start computing k-mer cardinality estimations (1/2) 73s KmerStream::KmerStream(): Finished 73s CompactedDBG::build(): Estimated number of k-mers occurring at least once: 22170 73s CompactedDBG::build(): Estimated number of minimizer occurring at least once: 5562 73s CompactedDBG::filter(): Processed 28144 k-mers in 14 reads 73s CompactedDBG::filter(): Found 22102 unique k-mers 73s CompactedDBG::filter(): Number of blocks in Bloom filter is 153 73s CompactedDBG::construct(): Extract approximate unitigs (1/2) 73s CompactedDBG::construct(): Extract approximate unitigs (2/2) 73s CompactedDBG::construct(): Closed all input files 73s 73s CompactedDBG::construct(): Splitting unitigs (1/2) 73s 73s CompactedDBG::construct(): Splitting unitigs (2/2) 73s CompactedDBG::construct(): Before split: 83 unitigs 73s CompactedDBG::construct(): After split (1/1): 7 unitigs 73s CompactedDBG::construct(): Unitigs split: 6 73s CompactedDBG::construct(): Unitigs deleted: 76 73s 73s CompactedDBG::construct(): Joining unitigs 73s CompactedDBG::construct(): After join: 7 unitigs 73s CompactedDBG::construct(): Joined 0 unitigs 73s [build] building MPHF 73s [build] creating equivalence classes ... 73s kallisto: ./src/KmerIndex.cpp:1198: void KmerIndex::PopulateMosaicECs(std::vector<std::vector<TRInfo> >&): Assertion `brpoints[0] == 0' failed. 73s /tmp/autopkgtest.Uv45nX/build.VK0/src/debian/tests/run-unit-test: line 19: 1523 Aborted kallisto index -i transcripts.kidx transcripts.fasta.gz 73s autopkgtest [07:33:29]: test run-unit-test: -----------------------] 74s autopkgtest [07:33:30]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 74s run-unit-test FAIL non-zero exit status 134 ...
