I get exactly the same issue.
After a bit of investigations, it seems that munin processes (graph, update, 
etc...)
don't remove their lock files when they end.
because I can always see /var/run/munin full of lock files even at the moment 
where
ps -Al | grep munin
only shows munin-node

I don't understand why the lock aren't removed because munin user as full 
access on his directory.





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