Chris, On 7 October 2007 at 20:30, Chris Lawrence wrote: | Package: r-base-dev | Version: 2.6.0-1 | Severity: important | | When attempting to update Zelig today, I got the following error | message: | | dh_installdirs usr/lib/R/site-library | if test -f /usr/bin/java; then \ | R CMD javareconf; | \ | fi | Java interpreter : /usr/bin/java | Java version : 1.6.0_03 | Java home path : /usr/lib/jvm/ia32-java-6-sun-1.6.0.03/jre | Java compiler : not present | Java headers gen.: | Java archive tool: /usr/bin/jar | ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be | preloaded: ignored. | ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be | preloaded: ignored. | ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be | preloaded: ignored. | Java library path: | $(JAVA_HOME)/lib/i386/server:$(JAVA_HOME)/lib/i386:$(JAVA_HOME)/../lib/i386::/usr/java/packages/lib/i386:/lib:/usr/lib | JNI linker flags : -L$(JAVA_HOME)/lib/i386/server | -L$(JAVA_HOME)/lib/i386 -L$(JAVA_HOME)/../lib/i386 -L | -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm | JNI cpp flags : ~autodetect~ | | Updating Java configuration in /etc/R | /usr/lib/R/bin/javareconf: line 303: /etc/R/Makeconf.new: Permission denied | *** cannot create /etc/R/Makeconf.new | *** Please run as root if required. | | make: *** [R_any_arch] Error 1 | debuild: fatal error at line 1237: | fakeroot debian/rules binary failed | | This appears to be related to the recent change to R-cran.mk to call | R CMD javareconf. Unfortunately, since Debian best practices are not | to build packages as root (instead using fakeroot), R CMD javareconf | fails. | | I suppose the simplest solution here is to ignore the error if R CMD | javareconf fails, but I'm open to other suggestions.
Were you doing this in a pbuilder chroot, or in a normal session? I have built numerous packages since I added the change, but all in pbuilder, and none may have had /usr/bin/java. Dirk | -- System Information: | Debian Release: lenny/sid | APT prefers unstable | APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental') | Architecture: amd64 (x86_64) | | Kernel: Linux 2.6.22.6 (SMP w/2 CPU cores; PREEMPT) | Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) | Shell: /bin/sh linked to /bin/bash | | Versions of packages r-base-dev depends on: | ii atlas3-base-dev [libbla 3.6.0-20.6 Automatically Tuned Linear Algebra | ii build-essential 11.3 informational list of build-essent | ii dpatch 2.0.27 patch maintenance system for Debia | ii g++-4.2 4.2.1-6 The GNU C++ compiler | ii gcc-4.2 4.2.1-6 The GNU C compiler | ii gfortran-4.2 4.2.1-6 The GNU Fortran 95 compiler | ii libbz2-dev 1.0.3-7 high-quality block-sorting file co | ii libjpeg62-dev 6b-14 Development files for the IJG JPEG | ii libncurses5-dev 5.6+20070908-1 Developer's libraries and docs for | ii libpcre3-dev 7.3-2 Perl 5 Compatible Regular Expressi | ii libpng12-dev 1.2.15~beta5-2 PNG library - development | ii libreadline5-dev 5.2-3 GNU readline and history libraries | ii r-base-core 2.6.0-1 GNU R core of statistical computin | ii refblas3-dev [libblas-3 1.2-8 Basic Linear Algebra Subroutines 3 | ii zlib1g-dev 1:1.2.3.3.dfsg-6 compression library - development | | r-base-dev recommends no packages. | | -- no debconf information | | -- Three out of two people have difficulties with fractions. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
