Package: r-base-core Version: 2.7.1-1+lenny1 Severity: important
It is not possible to install extra packages from CRAN in the designated way, for example svmpath: http://cran.r-project.org/web/packages/svmpath/index.html $ R CMD INSTALL svmpath_0.92.tar.gz -l lib svmpath_0.92.tar.gz WARNING: omitting pointless dependence on 'R' without a version requirement * Installing *source* package 'svmpath' ... ** libs gfortran -fpic -g -O2 -c mi02lib.f -o mi02lib.o gfortran -fpic -g -O2 -c mi05funs.f -o mi05funs.o gfortran -fpic -g -O2 -c mi10unix.f -o mi10unix.o gfortran -fpic -g -O2 -c mi11sys.f -o mi11sys.o gfortran -fpic -g -O2 -c mi12solv.f -o mi12solv.o gfortran -fpic -g -O2 -c mi15blas.f -o mi15blas.o gfortran -fpic -g -O2 -c mi17util.f -o mi17util.o gfortran -fpic -g -O2 -c mi20amat.f -o mi20amat.o gfortran -fpic -g -O2 -c mi21amat.f -o mi21amat.o gfortran -fpic -g -O2 -c mi25bfac.f -o mi25bfac.o gfortran -fpic -g -O2 -c mi26bfac.f -o mi26bfac.o gfortran -fpic -g -O2 -c mi27lu.f -o mi27lu.o gfortran -fpic -g -O2 -c mi30spec.f -o mi30spec.o gfortran -fpic -g -O2 -c mi35mps.f -o mi35mps.o gfortran -fpic -g -O2 -c mi36mps.f -o mi36mps.o gfortran -fpic -g -O2 -c mi40bfil.f -o mi40bfil.o gfortran -fpic -g -O2 -c mi50lp.f -o mi50lp.o gfortran -fpic -g -O2 -c mi60srch.f -o mi60srch.o gfortran -fpic -g -O2 -c mi65rmod.f -o mi65rmod.o gfortran -fpic -g -O2 -c mi70nobj.f -o mi70nobj.o gfortran -fpic -g -O2 -c mi80ncon.f -o mi80ncon.o gfortran -fpic -g -O2 -c mi81ncon.f -o mi81ncon.o gfortran -fpic -g -O2 -c qp.f -o qp.o gcc -std=gnu99 -shared -o svmpath.so mi02lib.o mi05funs.o mi10unix.o mi11sys.o mi12solv.o mi15blas.o mi17util.o mi20amat.o mi21amat.o mi25bfac.o mi26bfac.o mi27lu.o mi30spec.o mi35mps.o mi36mps.o mi40bfil.o mi50lp.o mi60srch.o mi65rmod.o mi70nobj.o mi80ncon.o mi81ncon.o qp.o -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [svmpath.so] Error 1 ERROR: compilation failed for package 'svmpath' ** Removing '/tmp/lib/svmpath' After symlinking the gfortran library, so that the linker finds it, there seems to occur an architecture problem: /usr/lib# ln -s libgfortran.so.3 libgfortran.so gcc -std=gnu99 -shared -o svmpath.so mi02lib.o mi05funs.o mi10unix.o mi11sys.o mi12solv.o mi15blas.o mi17util.o mi20amat.o mi21amat.o mi25bfac.o mi26bfac.o mi27lu.o mi30spec.o mi35mps.o mi36mps.o mi40bfil.o mi50lp.o mi60srch.o mi65rmod.o mi70nobj.o mi80ncon.o mi81ncon.o qp.o -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: skipping incompatible /usr/bin/../lib/libgfortran.so when searching for -lgfortran /usr/bin/ld: skipping incompatible /usr/lib/libgfortran.so when searching for -lgfortran /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status It makes no difference if I use the compiler switch -m64 or -m32 or when choosing libgfortran2. The error message "skipping incompatible" is always the same. -- System Information: Debian Release: 5.0.1 APT prefers stable APT policy: (500, 'stable'), (200, 'testing'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 2.6.27.15.amd64 (SMP w/1 CPU core; PREEMPT) Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) Shell: /bin/sh linked to /bin/bash Versions of packages r-base-core depends on: ii libatlas3gf-base [libl 3.6.0-22 Automatically Tuned Linear Algebra ii libblas3gf [libblas.so 1.2-2 Basic Linear Algebra Subroutines 3 ii libc6 2.7-18 GNU C Library: Shared libraries ii libcairo2 1.6.4-7 The Cairo 2D vector graphics libra ii libgfortran3 4.3.2-1.1 Runtime library for GNU Fortran ap ii libglib2.0-0 2.16.6-1+lenny1 The GLib library of C routines ii libice6 2:1.0.4-1 X11 Inter-Client Exchange library ii libjpeg62 6b-14 The Independent JPEG Group's JPEG ii liblapack3gf [liblapac 3.1.1-1 library of linear algebra routines ii libpango1.0-0 1.20.5-3+lenny1 Layout and rendering of internatio ii libpaper-utils 1.1.23+nmu1 library for handling paper charact ii libpcre3 7.6-2.1 Perl 5 Compatible Regular Expressi ii libpng12-0 1.2.27-2+lenny2 PNG library - runtime ii libreadline5 5.2-3.1 GNU readline and history libraries ii libsm6 2:1.0.3-2 X11 Session Management library ii libtiff4 3.8.2-11 Tag Image File Format (TIFF) libra ii libx11-6 2:1.1.5-2 X11 client-side library ii libxt6 1:1.0.5-3 X11 toolkit intrinsics library ii perl 5.10.0-19 Larry Wall's Practical Extraction ii tcl8.4 8.4.19-2 Tcl (the Tool Command Language) v8 ii tk8.4 8.4.19-2 Tk toolkit for Tcl and X11, v8.4 - ii ucf 3.0016 Update Configuration File: preserv ii unzip 5.52-12 De-archiver for .zip files ii zip 2.32-1 Archiver for .zip files ii zlib1g 1:1.2.3.3.dfsg-12 compression library - runtime Versions of packages r-base-core recommends: ii r-base-dev 2.7.1-1+lenny1 GNU R installation of auxiliary GN ii r-recommended 2.7.1-1+lenny1 GNU R collection of recommended pa Versions of packages r-base-core suggests: pn ess <none> (no description available) pn r-base-html | r-base-latex <none> (no description available) pn r-doc-info | r-doc-pdf | r-do <none> (no description available) pn r-mathlib <none> (no description available) -- no debconf information -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". 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