severity 549427 whishlist forwarded 549427 samtools-de...@lists.sourceforge.net thanks
Le Sat, Oct 03, 2009 at 12:09:59PM +0200, Andreas Barth a écrit : > Package: samtools > Version: 0.1.6~dfsg-1 > Severity: serious > > Hi, > > this package FTBFS on sparc: > > /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2 -fPIC" CXXFLAGS="-g -O2 -g > -Wall -O2" CPPFLAGS="" LDFLAGS="" -C examples all > make[1]: Entering directory > `/build/buildd-samtools_0.1.6~dfsg-1-sparc-aGfAkY/samtools-0.1.6~dfsg/examples' > ../samtools faidx ex1.fa > ../samtools import ex1.fa.fai ex1.sam.gz ex1.bam > [sam_header_read2] 2 sequences loaded. > make[1]: *** [ex1.bam] Bus error > make[1]: *** Deleting file `ex1.bam' > make[1]: Leaving directory > `/build/buildd-samtools_0.1.6~dfsg-1-sparc-aGfAkY/samtools-0.1.6~dfsg/examples' > make: *** [debian/stamp-makefile-check] Error 2 > dpkg-buildpackage: error: debian/rules build gave error exit status 2 > > Please see > https://buildd.debian.org/fetch.cgi?&pkg=samtools&ver=0.1.6%7Edfsg-1&arch=sparc&stamp=1254564365&file=log > for the ful build log. Dear sparc porters, the samtools package contains a program that is intended to be use with large biological datasets. It was never built with success on sparc, because the regression tests I implemented (taken from Upstream's example directory) are failing with a ‘Bus error‘. I just reported this on the upstream mailing list. Please let me know or contact Upstream directly if you have interest to work on this issue. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
