I can load molekule files with avogadro, but when i try to change something in it i also get 100% CPU. I played around with the display settings and i noticed, that it seems to depend on which options are enabled what happens. If i disable some options i often get a segmentation fault instead of the hang. But i don't know for sure which settings are the cause for the different behaviour. I use an Intel Mobile graphiccard with the intel i915 driver, kms enabled.
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