On Sat, 2010-06-12 at 18:14 -0700, Nicholas Breen wrote: > On Sun, Jun 13, 2010 at 12:11:02AM +0200, Jiri Wiesner wrote: > > Hello, > > it is not possible to run pymol. The execution ends with some python > > related error (see below). My reportbug package does not work either, hence > > I'm reporting the bug through email. > > That looks much more like a general python problem, not pymol itself. The > most > immediate guess is a corrupted or missing site.py -- try reinstalling the > "python2.5" and "python2.5-minimal" packages. > > >
Thank you for a quick answer. I have reinstalled "python2.5" and "python2.5-minimal", the errors are the same: iakchos:/home/wiesner# apt-get clean iakchos:/home/wiesner# aptitude -v reinstall python2.5 python2.5-minimal Reading package lists... Done Building dependency tree Reading state information... Done Reading extended state information Initializing package states... Done Reading task descriptions... Done The following packages will be REINSTALLED: python2.5 python2.5-minimal The following partially installed packages will be configured: gnochm openoffice.org-emailmerge python-chm python-numpy python-uno 0 packages upgraded, 0 newly installed, 2 reinstalled, 0 to remove and 0 not upgraded. Need to get 4327kB of archives. After unpacking 0B will be used. Writing extended state information... Done Get:1 http://security.debian.org lenny/updates/main python2.5 2.5.2-15 +lenny1 [3039kB] Get:2 http://security.debian.org lenny/updates/main python2.5-minimal 2.5.2-15+lenny1 [1287kB] Fetched 4327kB in 0s (4377kB/s) (Reading database ... 120111 files and directories currently installed.) Preparing to replace python2.5 2.5.2-15+lenny1 (using .../python2.5_2.5.2-15+lenny1_amd64.deb) ... Unpacking replacement python2.5 ... Preparing to replace python2.5-minimal 2.5.2-15+lenny1 (using .../python2.5-minimal_2.5.2-15+lenny1_amd64.deb) ... Unpacking replacement python2.5-minimal ... Processing triggers for menu ... Processing triggers for man-db ... Setting up python-chm (0.8.4-0.1+b1) ... 'import site' failed; use -v for traceback Traceback (most recent call last): File "/usr/sbin/update-python-modules", line 7, in <module> import sys,os,shutil ImportError: No module named os dpkg: error processing python-chm (--configure): subprocess post-installation script returned error exit status 1 dpkg: dependency problems prevent configuration of gnochm: gnochm depends on python-chm (>= 0.8.2-2); however: Package python-chm is not configured yet. dpkg: error processing gnochm (--configure): dependency problems - leaving unconfigured Setting up python-numpy (1:1.1.0-3+lenny1) ... 'import site' failed; use -v for traceback Traceback (most recent call last): File "/usr/bin/pycentral", line 3, in <module> import fnmatch, glob, os, re, string, sys, time, cStringIO ImportError: No module named fnmatch dpkg: error processing python-numpy (--configure): subprocess post-installation script returned error exit status 1 Setting up python2.5-minimal (2.5.2-15+lenny1) ... 'import site' failed; use -v for traceback Setting up python2.5 (2.5.2-15+lenny1) ... 'import site' failed; use -v for traceback Setting up python-uno (1:2.4.1+dfsg-1+lenny7) ... 'import site' failed; use -v for traceback Traceback (most recent call last): File "/usr/bin/pycentral", line 3, in <module> import fnmatch, glob, os, re, string, sys, time, cStringIO ImportError: No module named fnmatch dpkg: error processing python-uno (--configure): subprocess post-installation script returned error exit status 1 dpkg: dependency problems prevent configuration of openoffice.org-emailmerge: openoffice.org-emailmerge depends on python-uno; however: Package python-uno is not configured yet. dpkg: error processing openoffice.org-emailmerge (--configure): dependency problems - leaving unconfigured Processing triggers for menu ... Errors were encountered while processing: python-chm gnochm python-numpy python-uno openoffice.org-emailmerge E: Sub-process /usr/bin/dpkg returned an error code (1) A package failed to install. Trying to recover: Setting up python-chm (0.8.4-0.1+b1) ... 'import site' failed; use -v for traceback Traceback (most recent call last): File "/usr/sbin/update-python-modules", line 7, in <module> import sys,os,shutil ImportError: No module named os dpkg: error processing python-chm (--configure): subprocess post-installation script returned error exit status 1 Setting up python-uno (1:2.4.1+dfsg-1+lenny7) ... 'import site' failed; use -v for traceback Traceback (most recent call last): File "/usr/bin/pycentral", line 3, in <module> import fnmatch, glob, os, re, string, sys, time, cStringIO ImportError: No module named fnmatch dpkg: error processing python-uno (--configure): subprocess post-installation script returned error exit status 1 dpkg: dependency problems prevent configuration of openoffice.org-emailmerge: openoffice.org-emailmerge depends on python-uno; however: Package python-uno is not configured yet. dpkg: error processing openoffice.org-emailmerge (--configure): dependency problems - leaving unconfigured dpkg: dependency problems prevent configuration of gnochm: gnochm depends on python-chm (>= 0.8.2-2); however: Package python-chm is not configured yet. dpkg: error processing gnochm (--configure): dependency problems - leaving unconfigured Errors were encountered while processing: python-chm python-uno openoffice.org-emailmerge gnochm Reading package lists... Done Building dependency tree Reading state information... Done Reading extended state information Initializing package states... Done Reading task descriptions... Done Current status: 0 broken [+0], 0 updates [+0], 0 new [+0]. iakchos:/home/wiesner# pymol 'import site' failed; use -v for traceback Traceback (most recent call last): File "/var/lib/python-support/python2.5/pymol//__init__.py", line 32, in <module> from copy import deepcopy ImportError: No module named copy Downgrading the python2.5, python2.5-dev and python2.5-minimal packages to the version 2.5.2-15 gives the same errors too. -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
