Package: libc6
Version: 2.11.2-2
Severity: normal
Since the upgrade to eglibc v2.11.1 several statically compiled binaries
(fold...@home client v6.29, distributed.net client, and more) fail with the
following error:
fah6: relocation error: /lib/libnss_files.so.2: symbol __rawmemchr, version
GLIBC_2.2.5 not defined in file libc.so.6 with link time reference
The problem occurs just after /etc/hosts is parsed (see attached strace log),
the problem can be worked around by using nscd host caching (which is broken
according to #335476). But it's not a comfortable solution.
This bug has also been reported in Ubuntu
(https://bugs.launchpad.net/ubuntu/+source/eglibc/+bug/574726), but not fix has
been provided to this day. This issue is also known to affect Fedora 12 & 13
who also use eglibc 2.11.
Some troubleshooting of this issue has been performed on the fold...@home
support forum: http://foldingforum.org/viewtopic.php?f=44&t=13064
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-5-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages libc6 depends on:
ii libc-bin 2.11.2-2 Embedded GNU C Library: Binaries
ii libgcc1 1:4.4.4-7 GCC support library
libc6 recommends no packages.
Versions of packages libc6 suggests:
ii debconf [debconf-2.0] 1.5.33 Debian configuration management sy
ii glibc-doc 2.11.2-2 Embedded GNU C Library: Documentat
ii locales 2.11.2-2 Embedded GNU C Library: National L
-- debconf information:
* glibc/upgrade: true
glibc/disable-screensaver:
glibc/restart-failed:
* glibc/restart-services: spamassassin ssh postfix openbsd-inetd dovecot cups
cron atd
execve("./fah6", ["./fah6"], [/* 22 vars */]) = 0
uname({sys="Linux", node="osiris", ...}) = 0
brk(0) = 0x1aca000
brk(0x1acaf30) = 0x1acaf30
arch_prctl(ARCH_SET_FS, 0x1aca860) = 0
set_tid_address(0x1aca8f0) = 20457
set_robust_list(0x1aca900, 0x18) = 0
rt_sigaction(SIGRTMIN, {0x43b510, [], SA_RESTORER|SA_SIGINFO, 0x43b860}, NULL,
8) = 0
rt_sigaction(SIGRT_1, {0x43b460, [], SA_RESTORER|SA_RESTART|SA_SIGINFO,
0x43b860}, NULL, 8) = 0
rt_sigprocmask(SIG_UNBLOCK, [RTMIN RT_1], NULL, 8) = 0
getrlimit(RLIMIT_STACK, {rlim_cur=8192*1024, rlim_max=RLIM_INFINITY}) = 0
brk(0x1aebf30) = 0x1aebf30
brk(0x1aec000) = 0x1aec000
open("client.cfg", O_RDONLY) = 3
flock(3, LOCK_SH|LOCK_NB) = 0
fstat(3, {st_mode=S_IFREG|0750, st_size=285, ...}) = 0
read(3, "[settings]\nusername=[DPC]_Fatal_"..., 285) = 285
flock(3, LOCK_UN) = 0
close(3) = 0
fstat(1, {st_mode=S_IFREG|0644, st_size=1049, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x7f7b3186e000
write(1, "\nNote: Please read the license a"..., 183
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
Using local directory for work files
) = 183
stat("FAHlog.txt", {st_mode=S_IFREG|0644, st_size=46278, ...}) = 0
open("FAHlog.txt", O_RDWR|O_CREAT|O_APPEND, 0666) = 3
write(1, "\n\n--- Opening Log file [July 15 "..., 48
--- Opening Log file [July 15 09:49:57 UTC]
) = 48
fstat(3, {st_mode=S_IFREG|0644, st_size=46278, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x7f7b3186d000
write(3, "\n\n--- Opening Log file [July 15 "..., 48) = 48
write(1, "\n# Linux Console Edition #######"..., 81
# Linux Console Edition #######################################################
) = 81
write(3, "\n# Linux Console Edition #######"..., 81) = 81
write(1, "################################"...,
80###############################################################################
) = 80
write(3, "################################"..., 80) = 80
write(1, "\n", 1
) = 1
write(3, "\n", 1) = 1
write(1, " fold...@h"..., 56
fold...@home Client Version 6.29
) = 56
write(3, " fold...@h"..., 56) = 56
write(1, "\n", 1
) = 1
write(3, "\n", 1) = 1
write(1, " http:/"..., 54
http://folding.stanford.edu
) = 54
write(3, " http:/"..., 54) = 54
write(1, "\n", 1
) = 1
write(3, "\n", 1) = 1
write(1, "################################"...,
80###############################################################################
) = 80
write(3, "################################"..., 80) = 80
write(1, "################################"...,
80###############################################################################
) = 80
write(3, "################################"..., 80) = 80
write(1, "\n", 1
) = 1
write(3, "\n", 1) = 1
getcwd("/home/bas/software/folding", 511) = 27
write(1, "Launch directory: /home/bas/soft"..., 45Launch directory:
/home/bas/software/folding
) = 45
write(3, "Launch directory: /home/bas/soft"..., 45) = 45
write(1, "Executable: ./fah6\n", 19Executable: ./fah6
) = 19
write(3, "Executable: ./fah6\n", 19) = 19
write(1, "Arguments: ", 11Arguments: ) = 11
write(3, "Arguments: ", 11) = 11
write(1, "-local ", 7-local ) = 7
write(3, "-local ", 7) = 7
write(1, "\n\n", 2
) = 2
write(3, "\n\n", 2) = 2
sysinfo({uptime=185414, loads=[227232, 191232, 182048] totalram=4158464000,
freeram=99012608, sharedram=0, bufferram=446427136} totalswap=8003153920,
freeswap=8000319488, procs=686}) = 0
open("client.cfg", O_RDONLY) = 4
flock(4, LOCK_SH|LOCK_NB) = 0
fstat(4, {st_mode=S_IFREG|0750, st_size=285, ...}) = 0
read(4, "[settings]\nusername=[DPC]_Fatal_"..., 285) = 285
flock(4, LOCK_UN) = 0
close(4) = 0
write(1, "[09:49:57] - Ask before connecti"..., 39[09:49:57] - Ask before
connecting: No
) = 39
write(3, "[09:49:57] - Ask before connecti"..., 39) = 39
write(1, "[09:49:57] - User name: [DPC]_Fa"..., 59[09:49:57] - User name:
[DPC]_Fatal_Error_Group0smoking2000) = 59
write(3, "[09:49:57] - User name: [DPC]_Fa"..., 59) = 59
write(1, " (Team 92)\n", 11 (Team 92)
) = 11
write(3, " (Team 92)\n", 11) = 11
open("machinedependent.dat", O_RDONLY) = 4
fstat(4, {st_mode=S_IFREG|0644, st_size=8, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x7f7b3186c000
read(4, "\235;\201 \235\16u}", 4096) = 8
close(4) = 0
munmap(0x7f7b3186c000, 4096) = 0
write(1, "[09:49:57] - User ID: 7D750E9D20"..., 39[09:49:57] - User ID:
7D750E9D20813B9D
) = 39
write(3, "[09:49:57] - User ID: 7D750E9D20"..., 39) = 39
write(1, "[09:49:57] - Machine ID: 1\n", 27[09:49:57] - Machine ID: 1
) = 27
write(3, "[09:49:57] - Machine ID: 1\n", 27) = 27
write(1, "[09:49:57] \n", 12[09:49:57]
) = 12
write(3, "[09:49:57] \n", 12) = 12
mkdir("/tmp/fah", 0750) = -1 EEXIST (File exists)
open("/tmp/fah/f1", O_RDONLY) = 4
fstat(4, {st_mode=S_IFREG|0644, st_size=33, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x7f7b3186c000
read(4, "20359\n/home/bas/software/folding"..., 4096) = 33
kill(20359, SIG_0) = -1 ESRCH (No such process)
close(4) = 0
munmap(0x7f7b3186c000, 4096) = 0
open("/tmp/fah/f1", O_WRONLY|O_CREAT|O_TRUNC, 0666) = 4
fstat(4, {st_mode=S_IFREG|0644, st_size=0, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x7f7b3186c000
getcwd("/home/bas/software/folding", 255) = 27
write(4, "20457\n/home/bas/software/folding"..., 33) = 33
close(4) = 0
munmap(0x7f7b3186c000, 4096) = 0
stat("MyFolding.html", {st_mode=S_IFREG|0644, st_size=5279, ...}) = 0
open("work/", O_RDONLY|O_NONBLOCK|O_DIRECTORY) = 4
fstat(4, {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0
fcntl(4, F_SETFD, FD_CLOEXEC) = 0
close(4) = 0
open("queue.dat", O_RDONLY) = 4
fstat(4, {st_mode=S_IFREG|0644, st_size=7168, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x7f7b3186c000
read(4,
"\365\1\0\0\2\0\0\0\0\0\0\0\4\0\0\0009\360\223\23\0\0\0\0\310\224\227\377W\0359r"...,
4096) = 4096
read(4, "\0\0\0\0\f\0\0\0\0\0\0\0\0\0\0\0\0\0\0\4P6075R0C80G2"..., 4096) = 3072
nanosleep({0, 150000000}, 0x7fffb5c10000) = 0
close(4) = 0
munmap(0x7f7b3186c000, 4096) = 0
write(1, "[09:49:57] Loaded queue successf"..., 38[09:49:57] Loaded queue
successfully.
) = 38
write(3, "[09:49:57] Loaded queue successf"..., 38) = 38
mmap(NULL, 8392704, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_32BIT,
-1, 0) = 0x40c88000
mprotect(0x40c88000, 4096, PROT_NONE) = 0
clone(Process 20458 attached
child_stack=0x414880d0,
flags=CLONE_VM|CLONE_FS|CLONE_FILES|CLONE_SIGHAND|CLONE_THREAD|CLONE_SYSVSEM|CLONE_SETTLS|CLONE_PARENT_SETTID|CLONE_CHILD_CLEARTID,
parent_tidptr=0x414889d0, tls=0x41488940, child_tidptr=0x414889d0) = 20458
[pid 20457] nanosleep({268435, 455000000}, <unfinished ...>
[pid 20458] set_robust_list(0x414889e0, 0x18) = 0
[pid 20458] rt_sigaction(SIGINT, {0x400320, [INT], SA_RESTORER|SA_RESTART,
0x43b860}, {SIG_DFL, [], 0}, 8) = 0
[pid 20458] rt_sigaction(SIGTERM, {0x400320, [TERM], SA_RESTORER|SA_RESTART,
0x43b860}, {SIG_DFL, [], 0}, 8) = 0
[pid 20458] mmap(NULL, 8392704, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_ANONYMOUS|MAP_32BIT, -1, 0) = 0x41db0000
[pid 20458] mprotect(0x41db0000, 4096, PROT_NONE) = 0
[pid 20458] clone(Process 20459 attached
child_stack=0x425b00d0,
flags=CLONE_VM|CLONE_FS|CLONE_FILES|CLONE_SIGHAND|CLONE_THREAD|CLONE_SYSVSEM|CLONE_SETTLS|CLONE_PARENT_SETTID|CLONE_CHILD_CLEARTID,
parent_tidptr=0x425b09d0, tls=0x425b0940, child_tidptr=0x425b09d0) = 20459
[pid 20458] write(1, "[09:49:57] - Preparing to get ne"..., 47[09:49:57] -
Preparing to get new work unit...
) = 47
[pid 20458] write(3, "[09:49:57] - Preparing to get ne"..., 47) = 47
[pid 20458] write(1, "[09:49:57] Cleaning up work dire"..., 38[09:49:57]
Cleaning up work directory
) = 38
[pid 20458] write(3, "[09:49:57] Cleaning up work dire"..., 38) = 38
[pid 20458] open("work/", O_RDONLY|O_NONBLOCK|O_DIRECTORY) = 4
[pid 20458] fstat(4, {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0
[pid 20458] fcntl(4, F_SETFD, FD_CLOEXEC) = 0
[pid 20458] getdents(4, /* 24 entries */, 4096) = 912
[pid 20458] getdents(4, /* 0 entries */, 4096) = 0
[pid 20458] close(4) = 0
[pid 20458] write(1, "[09:49:57] + Attempting to get w"..., 43[09:49:57] +
Attempting to get work packet
) = 43
[pid 20458] write(3, "[09:49:57] + Attempting to get w"..., 43) = 43
[pid 20458] write(1, "[09:49:57] Passkey found\n", 25[09:49:57] Passkey found
) = 25
[pid 20458] write(3, "[09:49:57] Passkey found\n", 25) = 25
[pid 20458] write(1, "[09:49:57] - Connecting to assig"..., 45[09:49:57] -
Connecting to assignment server
) = 45
[pid 20458] write(3, "[09:49:57] - Connecting to assig"..., 45) = 45
[pid 20458] rt_sigaction(SIGPIPE, {SIG_IGN, [PIPE], SA_RESTORER|SA_RESTART,
0x43b860}, {SIG_DFL, [], 0}, 8) = 0
[pid 20458] socket(PF_FILE, SOCK_STREAM, 0) = 4
[pid 20458] fcntl(4, F_GETFL) = 0x2 (flags O_RDWR)
[pid 20458] fcntl(4, F_SETFL, O_RDWR|O_NONBLOCK) = 0
[pid 20458] connect(4, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) =
-1 ENOENT (No such file or directory)
[pid 20458] close(4) = 0
[pid 20458] socket(PF_FILE, SOCK_STREAM, 0) = 4
[pid 20458] fcntl(4, F_GETFL) = 0x2 (flags O_RDWR)
[pid 20458] fcntl(4, F_SETFL, O_RDWR|O_NONBLOCK) = 0
[pid 20458] connect(4, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) =
-1 ENOENT (No such file or directory)
[pid 20458] close(4) = 0
[pid 20458] open("/etc/nsswitch.conf", O_RDONLY) = 4
[pid 20458] fstat(4, {st_mode=S_IFREG|0644, st_size=513, ...}) = 0
[pid 20458] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS,
-1, 0) = 0x7f7b3186c000
[pid 20458] read(4, "# /etc/nsswitch.conf\n#\n# Example"..., 4096) = 513
[pid 20458] read(4, "", 4096) = 0
[pid 20458] close(4) = 0
[pid 20458] munmap(0x7f7b3186c000, 4096) = 0
[pid 20458] open("/etc/resolv.conf", O_RDONLY) = 4
[pid 20458] fstat(4, {st_mode=S_IFREG|0644, st_size=250, ...}) = 0
[pid 20458] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS,
-1, 0) = 0x7f7b3186c000
[pid 20458] read(4, "# Dynamic resolv.conf(5) file fo"..., 4096) = 250
[pid 20458] read(4, "", 4096) = 0
[pid 20458] close(4) = 0
[pid 20458] munmap(0x7f7b3186c000, 4096) = 0
[pid 20458] open("/etc/ld.so.cache", O_RDONLY) = 4
[pid 20458] fstat(4, {st_mode=S_IFREG|0644, st_size=153484, ...}) = 0
[pid 20458] mmap(NULL, 153484, PROT_READ, MAP_PRIVATE, 4, 0) = 0x7f7b31847000
[pid 20458] close(4) = 0
[pid 20458] open("/lib/libnss_files.so.2", O_RDONLY) = 4
[pid 20458] read(4,
"\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0p!\0\0\0\0\0\0"..., 832) = 832
[pid 20458] fstat(4, {st_mode=S_IFREG|0644, st_size=47616, ...}) = 0
[pid 20458] mmap(NULL, 2143624, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE,
4, 0) = 0x7f7b3163b000
[pid 20458] mprotect(0x7f7b31646000, 2093056, PROT_NONE) = 0
[pid 20458] mmap(0x7f7b31845000, 8192, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 4, 0xa000) = 0x7f7b31845000
[pid 20458] close(4) = 0
[pid 20458] open("/lib/libc.so.6", O_RDONLY) = 4
[pid 20458] read(4,
"\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0`\355\1\0\0\0\0\0"..., 832) = 832
[pid 20458] fstat(4, {st_mode=S_IFREG|0755, st_size=1432968, ...}) = 0
[pid 20458] mmap(NULL, 3541032, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE,
4, 0) = 0x7f7b312da000
[pid 20458] mprotect(0x7f7b31432000, 2093056, PROT_NONE) = 0
[pid 20458] mmap(0x7f7b31631000, 20480, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 4, 0x157000) = 0x7f7b31631000
[pid 20458] mmap(0x7f7b31636000, 18472, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f7b31636000
[pid 20458] close(4) = 0
[pid 20459] set_robust_list(0x425b09e0, 0x18) = 0
[pid 20459] nanosleep({21600, 0}, <unfinished ...>
[pid 20458] open("/lib/ld-linux-x86-64.so.2", O_RDONLY) = 4
[pid 20458] read(4,
"\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\360\n\0\0\0\0\0\0"..., 832) =
832
[pid 20458] fstat(4, {st_mode=S_IFREG|0755, st_size=128744, ...}) = 0
[pid 20458] mmap(NULL, 2224424, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE,
4, 0) = 0x7f7b310ba000
[pid 20458] mprotect(0x7f7b310d8000, 2093056, PROT_NONE) = 0
[pid 20458] mmap(0x7f7b312d7000, 8192, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 4, 0x1d000) = 0x7f7b312d7000
[pid 20458] mmap(0x7f7b312d9000, 296, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f7b312d9000
[pid 20458] close(4) = 0
[pid 20458] mprotect(0x7f7b312d7000, 4096, PROT_READ) = 0
[pid 20458] mprotect(0x7f7b31631000, 16384, PROT_READ) = 0
[pid 20458] mprotect(0x7f7b31845000, 4096, PROT_READ) = 0
[pid 20458] munmap(0x7f7b31847000, 153484) = 0
[pid 20458] mmap(NULL, 1048576, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f7b30fba000
[pid 20458] open("/etc/hosts", O_RDONLY|O_CLOEXEC) = 4
[pid 20458] fcntl(4, F_GETFD) = 0x1 (flags FD_CLOEXEC)
[pid 20458] fstat(4, {st_mode=S_IFREG|0644, st_size=30395, ...}) = 0
[pid 20458] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS,
-1, 0) = 0x7f7b3186c000
[pid 20458] read(4, "127.0.0.1\tlocalhost\n\n10.0.0.10\tm"..., 4096) = 4096
[pid 20458] writev(2, [{"fah6", 4}, {": ", 2}, {"relocation error", 16}, {": ",
2}, {"/lib/libnss_files.so.2", 22}, {": ", 2}, {"symbol __rawmemchr, version
GLIB"..., 94}, {"", 0}, {"", 0}, {"\n", 1}], 10fah6: relocation error:
/lib/libnss_files.so.2: symbol __rawmemchr, version GLIBC_2.2.5 not defined in
file libc.so.6 with link time reference
) = 143
[pid 20458] exit_group(127) = ?
Process 20458 detached
