Package: emboss
Version: 6.3.1-2
Severity: serious
Tags: patch
User: [email protected]
Usertags: kfreebsd
Hi,
the emboss doesn't build on kfreebsd-i386, kfreebsd-amd64 and hppa anymore.
The problem is:
emboss (6.3.1-2) unstable; urgency=low
* Moved openjdk-6-jdk to Build-Depends
Please use default-jdk instead of openjdk-6-jdk
and default-jre instead of openjdk-6-jre, see diffs bellow.
These packages provide default java implementation,
on avr32, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k
it is gcj and on the rest it is openjdk-6.
Thanks
Petr
--- debian/rules
+++ debian/rules
@@ -15,13 +15,8 @@
CONFFLAGS += --bindir=/usr/lib/emboss
CONFFLAGS += --enable-systemlibs
-# If openjdk-6-jdk is not installed don't tell configure to use it.
-# This allows binary-arch builds to be performed without openjdk
-# installed.
-ifneq ($(wildcard /usr/lib/jvm/java-6-openjdk/include/classfile_constants.h),)
- CONFFLAGS += --with-java=/usr/lib/jvm/java-6-openjdk/include
- CONFFLAGS += --with-javaos=/usr/lib/jvm/java-6-openjdk/include/linux
-endif
+CONFFLAGS += --with-java=/usr/lib/jvm/default-java/include
+CONFFLAGS += --with-javaos=/usr/lib/jvm/default-java/include/linux
DEB_LDFLAGS += -lexpat
DEB_LDFLAGS += $(shell mysql_config --libs)
--- debian/control
+++ debian/control
@@ -6,8 +6,8 @@
Uploaders: Charles Plessy <[email protected]>, Nelson A. de Oliveira
<[email protected]>
Build-Depends: debhelper (>= 7), quilt, libx11-dev, x11proto-core-dev,
libgdchart-gd2-xpm-dev, zlib1g-dev, libpng12-dev, libpcre3-dev, libexpat1-dev,
libmysqlclient-dev, libpq-dev, antiword, sharutils, autotools-dev, tcsh | csh |
c-shell,
# Needed until the following is solved:
https://sourceforge.net/tracker/?func=detail&aid=3033326&group_id=93650&atid=605031
- openjdk-6-jdk
-#Build-Depends-Indep: openjdk-6-jdk
+ default-jdk
+#Build-Depends-Indep: default-jdk
Vcs-Browser: http://git.debian.org/?p=debian-med/emboss.git
Vcs-Git: git://git.debian.org/git/debian-med/emboss.git
Standards-Version: 3.9.0
@@ -68,7 +68,7 @@
Package: jemboss
Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, openjdk-6-jre, tcsh | csh |
c-shell
+Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre, tcsh | csh | c-shell
Description: graphical user interface to EMBOSS
Jemboss is a Graphical User Interface (GUI) to EMBOSS, the European Molecular
Biology Open Software Suite. It is part of the EMBOSS distribution.
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