Package: biomaj Version: 1.1.0-1 Severity: minor No problem during install and running the sample alu db. But, I got a minor error
/usr/share/biomaj/bin/biomaj.sh: line 103: /usr/share/biomaj/tmp/.bmajpid_alu: Aucun fichier ou dossier de ce type (for no french speaker => means no found or directory found) In fact /usr/share/biomaj/tmp doesn't exist, and I think is ok with the debian policy. The code in biomaj.sh is : echo $$>$BIOMAJ_ROOT/tmp/.bmajpid_$arg with $BIOMAJ_ROOT = /usr/share/biomaj There is a tmp directory for biomaj (tmp.dir in /etc/biomaj/general.conf) but it's use by the java code not the shell script starting biomaj. I think that the pid file should go to /var/lib/biomaj/tmp or /var/run/biomaj or either /tmp /var/lib/biomaj/tmp is created by the package so it can be use, even if you change the location in general.conf (like I did, to put databases on another partition). Thanks for the packaging. Best regard, Anthony. -- System Information: Debian Release: wheezy/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 2.6.38-2-686-bigmem (SMP w/1 CPU core) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages biomaj depends on: ii ant 1.8.0-4 Java based build tool like make ii ant-contrib 1.0~b3+svn177-2 collection of tasks, types and oth ii debconf [debconf-2 1.5.38 Debian configuration management sy ii junit4 4.8.2-2 JUnit regression test framework fo ii libcommons-dbcp-ja 1.4-1 Database Connection Pooling Servic ii libcommons-net-jav 1.4.1-2 internet protocol suite Java libra ii libcommons-pool-ja 1.5.6-1 pooling implementation for Java ob ii libgnujaf-java 1.1.1-5 free implementation of the javabea ii libgnumail-java 1.1.2-5 free implementation of the javamai ii libhsqldb-java 1.8.0.10-9 Java SQL database engine ii libjcommon-java 1.0.16-1 General Purpose library for Java ii libjdom1-java 1.1.1+dfsg-1 lightweight and fast library using ii libjfreechart-java 1.0.13-3 Chart library for Java ii libjgoodies-forms- 1.3.0-1 Framework to lay out and implement ii libjsch-java 0.1.42-2 pure Java implementation of the SS ii liblog4j1.2-java 1.2.15-11 Logging library for java ii libmysql-java 5.1.10+dfsg-2 Java database (JDBC) driver for My ii liboro-java 2.0.8a-7 Regular expression library for Jav ii libregexp-java 1.5-2 Regular expression library for Jav ii libsaxonb-java 9.0.0.4+svn20080322-3 The Saxon-B XSLT Processor ii openjdk-6-jdk 6b18-1.8.7-2 OpenJDK Development Kit (JDK) biomaj recommends no packages. Versions of packages biomaj suggests: ii blast2 1:2.2.24.20100808-2 Basic Local Alignment Search Tool pn mysql-community-serv <none> (no description available) ii ncbi-tools-bin 6.1.20100808-2 NCBI libraries for biology applica -- Configuration Files: /etc/biomaj/db_properties/global.properties changed [not included] /etc/biomaj/general.conf changed [not included] -- debconf information excluded -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org