Your message dated Sat, 22 May 2010 10:49:19 -0500
with message-id <[email protected]>
has caused the report #582505,
regarding python-rpy2: No modules compiled for Python 2.5
to be marked as having been forwarded to the upstream software
author(s) Laurent Gautier <[email protected]>
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--
582505: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=582505
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Salut Laurent,
I hadn;t noticed that python2.5 and rpy2 2.1.1 don't seem to get along. The
builds proceeds for python2.6 but I missed the failure on 2.5. I had a quick
look, but this is above my pay grade for python extensions. Any hints or
fixes would be appreciated!
Greetings from Vienna, Dirk
On 21 May 2010 at 13:09, Gaubitzer Erwin wrote:
| Package: python-rpy2
| Version: 2.1.1-1
| Severity: normal
|
| There are no files in
| /usr/lib/python2.5/site-packages
|
| because compilation fails, as checked by
| apt-get -b source python-rpy2
|
| with following output
|
| ....
| for python in python2.5 python2.6; \
| do $python setup.py install --root=debian/python-rpy2; \
| done
| running install
| running build
| running build_py
| running build_ext
| building 'rpy2.rinterface.rinterface' extension
| gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall
| -Wstrict-prototypes -g -O2 -fPIC -DR_INTERFACE_PTRS=1
| -DHAVE_POSIX_SIGJMP=1 -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1
| -Irpy/rinterface -I/usr/include/python2.5 -I/usr/share/R/include -c
| rpy/rinterface/rinterface.c -o
| build/temp.linux-x86_64-2.5/rpy/rinterface/rinterface.o
| -L/usr/lib64/R/lib -lR -llapack -lblas
| In file included from /usr/include/python2.5/Python.h:8,
| from rpy/rinterface/rinterface.c:55:
| /usr/include/python2.5/pyconfig.h:970:1: warning: "_POSIX_C_SOURCE"
| redefined
| In file included from /usr/include/signal.h:29,
| from rpy/rinterface/rinterface.c:51:
| /usr/include/features.h:210:1: warning: this is the location of the
| previous definition
| In file included from rpy/rinterface/rinterface.c:74:
| /usr/share/R/include/R_ext/Rdynload.h:26: warning: function declaration
| isn’t a prototype
| In file included from rpy/rinterface/rinterface.c:100:
| rpy/rinterface/na_values.c: In function ‘NAInteger_tp_new’:
| rpy/rinterface/na_values.c:179: warning: implicit declaration of
| function ‘Py_SIZE’
| rpy/rinterface/na_values.c:188: error: lvalue required as left operand
| of assignment
| In file included from rpy/rinterface/rinterface.c:105:
| rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
| rpy/rinterface/sequence.c:447: warning: unused variable ‘sexp_item’
| rpy/rinterface/sequence.c:447: warning: unused variable ‘tmp’
| rpy/rinterface/sequence.c:446: warning: unused variable ‘vs’
| rpy/rinterface/sequence.c:386: warning: unused variable ‘self_typeof’
| rpy/rinterface/rinterface.c: In function ‘EmbeddedR_end’:
| rpy/rinterface/rinterface.c:1112: warning: unused variable ‘str’
| error: command 'gcc' failed with exit status 1
| ....
|
| In the following python2.6 modules get compiled without problem into
| /usr/lib/python2.6/dist-packages/rpy2
|
| Thanks
| Erwin
|
|
|
| -- System Information:
| Debian Release: squeeze/sid
| APT prefers testing
| APT policy: (900, 'testing'), (300, 'stable'), (100, 'unstable')
| Architecture: amd64 (x86_64)
|
| Kernel: Linux 2.6.32-3-amd64 (SMP w/2 CPU cores)
| Locale: LANG=de_AT.UTF-8, LC_CTYPE=de_AT.UTF-8 (charmap=UTF-8)
| Shell: /bin/sh linked to /bin/dash
|
| Versions of packages python-rpy2 depends on:
| ii libc6 2.10.2-6 Embedded GNU C Library: Shared
lib
| ii python 2.5.4-9 An interactive high-level
object-o
| ii python-central 0.6.14+nmu2 register and build utility for
Pyt
| ii python-fann [python] 20091015-1 Package created with
checkinstall
| ii python-numpy 1:1.3.0-3+b1 Numerical Python adds a fast
array
| ii r-base-core 2.11.0-1 GNU R core of statistical
computat
|
| python-rpy2 recommends no packages.
|
| Versions of packages python-rpy2 suggests:
| pn python-rpy-docs <none> (no description available)
|
| -- no debconf information
|
|
--
Regards, Dirk
--- End Message ---
