Hello Ondrej, Thank you for your detailed inquiry into this issue. I'm glad you got it working.
On Wed, 2007-11-07 at 23:54 +0100, Ondrej Certik wrote: > On Nov 7, 2007 9:52 PM, Ondrej Certik <[EMAIL PROTECTED]> wrote: > > > TESTING: checkCxxCompiler from > > > config.setCompilers(/tmp/buildd/petsc-2.3.3/python/BuildSystem/config/setCompilers.py:541) > > > TESTING: checkFortranCompiler from > > > config.setCompilers(/tmp/buildd/petsc-2.3.3/python/BuildSystem/config/setCompilers.py:708) > > > ********************************************************************************* > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log > > > for details): > > > --------------------------------------------------------------------------------------- > > > bin/mpif90[f77] you provided with --with-mpi-dir=/usr does not work > > > Run with --with-fc=0 if you wish to use this MPI and disable Fortran > > > ********************************************************************************* > > > > > > make: *** [build-arch] Error 1 > > > dpkg-buildpackage: failure: debian/rules build gave error exit status 2 > > > pbuilder: Failed autobuilding of package > > > -> Aborting with an error > > > -> unmounting dev/pts filesystem > > > -> unmounting proc filesystem > > > -> cleaning the build env > > > -> removing directory /var/cache/pbuilder/build//9858 and its > > > subdirectories > > > > > > > > > Are you able to reproduce this problem? > > > > > > I found and reported this particular problem: > > > > http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=450518 > > > > I provide a temporary fix in there, but this cannot be easily fixed in > > pbuilder, until a new version of openmpi is uploaded. Fixing it by > > hand and using debuild seems to make petsc build. Uff... It's funny, I had the same problem with mpich and openmpi: when I purged mpich, it still had mpich links to mpicc and friends, so I needed to update-alternatives --auto mpicc and mpirun. It's odd because mpich has its postinst and prerm, so I'm not sure why the prerm wasn't successfully removing the links... > That problem is fixed. However, the pbuilder still fails - it should > fail for you too. > > I discovered, that you need to change this in build-depends: > > gfortran | fortran-compiler > > to this: > > gfortran > > and when you do that, it builds in pbuilder. The problem is, that it > probably calls g77, instead of gfortran. Okay, I will upload a new PETSc with this fix and the new watch file you sent me. Thanks! > OK, so petsc seems to be ok now. I am going to try libmesh. Please > don't close this issue yet - there could be other problems with > g77/gfortran and maybe the proposed fix is not really a fix (i.e. > causes other problems). Need to check libmesh out first. Great. I can't wait to try out the new libmesh with its new elements for 4th order Cahn-Hilliard simulations... -Adam -- GPG fingerprint: D54D 1AEE B11C CE9B A02B C5DD 526F 01E8 564E E4B6 Engineering consulting with open source tools http://www.opennovation.com/ -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
