Your message dated Wed, 09 Apr 2008 15:02:41 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#468060: fixed in amap-align 2.0-3.1
has caused the Debian Bug report #468060,
regarding amap-align: FTBFS with g++-4.3: Missing includes
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
468060: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=468060
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: amap-align
Version: 2.0-3
Severity: important
User: [EMAIL PROTECTED]
Usertags: ftbfs-gcc-4.3
From my pbuilder build log, with g++ -> g++-4.3:
...
g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=1 -DVERSION='"AMAP.2.0"'
-funroll-loops -lm -o amap Amap.cc
In file included from Amap.cc:12:
ProbabilisticModel.h: In member function 'void
ProbabilisticModel::ComputeNewParameters(Sequence*, Sequence*, const VF&, const
VF&, VF&, VF&, VF&, VVF&, VF&, bool) const':
ProbabilisticModel.h:504: warning: suggest parentheses around && within ||
Amap.cc: In function 'SafeVector<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > ParseParams(int, char**)':
Amap.cc:713: error: 'strcmp' was not declared in this scope
make[1]: *** [amap] Error 1
make[1]: Leaving directory `/tmp/buildd/amap-align-2.0'
make: *** [build-stamp] Error 2
dpkg-buildpackage: failure: debian/rules build gave error exit status 2
--
Daniel Schepler
--- End Message ---
--- Begin Message ---
Source: amap-align
Source-Version: 2.0-3.1
We believe that the bug you reported is fixed in the latest version of
amap-align, which is due to be installed in the Debian FTP archive:
amap-align_2.0-3.1.diff.gz
to pool/main/a/amap-align/amap-align_2.0-3.1.diff.gz
amap-align_2.0-3.1.dsc
to pool/main/a/amap-align/amap-align_2.0-3.1.dsc
amap-align_2.0-3.1_sparc.deb
to pool/main/a/amap-align/amap-align_2.0-3.1_sparc.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Adeodato Simó <[EMAIL PROTECTED]> (supplier of updated amap-align package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Wed, 9 Apr 2008 16:44:11 +0200
Source: amap-align
Binary: amap-align
Architecture: source sparc
Version: 2.0-3.1
Distribution: unstable
Urgency: medium
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Adeodato Simó <[EMAIL PROTECTED]>
Description:
amap-align - Protein multiple alignment by sequence annealing
Closes: 468060
Changes:
amap-align (2.0-3.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Extend debian/patches/20_fix-gcc-4.3-build with more include fixes from
Anibal Avelar. (Closes: #468060)
* Move the Conflicts line in debian/control from the source stanza to the
binary stanza, so that the package builds.
Files:
0ae74783b44dfea0af47e397367079da 1050 science optional amap-align_2.0-3.1.dsc
d968e81f7aea463a43320103a1cb1ff2 7458 science optional
amap-align_2.0-3.1.diff.gz
6af3e5287cb491d7b21f22152d495c70 108878 science optional
amap-align_2.0-3.1_sparc.deb
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Version: GnuPG v1.4.6 (GNU/Linux)
Comment: Signed by Adeodato Simó <[EMAIL PROTECTED]>
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--- End Message ---
