Your message dated Tue, 03 Jun 2008 01:47:03 +0000 with message-id <[EMAIL PROTECTED]> and subject line Bug#484201: fixed in libgo-perl 0.08-2 has caused the Debian Bug report #484201, regarding libgo-perl: FTBFS: t/t270oborel_in_owl......sh: xsltproc: command not found to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [EMAIL PROTECTED] immediately.) -- 484201: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=484201 Debian Bug Tracking System Contact [EMAIL PROTECTED] with problems
--- Begin Message ---Package: libgo-perl Version: 0.08-1 Severity: serious User: [EMAIL PROTECTED] Usertags: qa-ftbfs-20080602 qa-ftbfs Justification: FTBFS on i386 Hi, During a rebuild of all packages in sid, your package failed to build on i386. Relevant part: > make[1]: Entering directory > `/build/user-libgo-perl_0.08-1-amd64-N1Ov_G/libgo-perl-0.08-1' > PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" > "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t > t/t010build..............ok > t/t020paths..............ok > t/t030detecterror........ok > t/t050oboformat..........ok > t/t060oboformat2.........ok > t/t070parseannot2obj.....ok > t/t080gofmt2.............ok > t/t100roundtrip..........ok > t/t110basic..............Use of uninitialized value $txt in substitution > (s///) at GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 82. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 82. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 82. > ok > t/t130relations..........Use of uninitialized value $txt in substitution > (s///) at GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 19. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 19. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 19. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 484, <GEN1> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 485, <GEN1> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 516, <GEN1> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 484, <GEN1> line 82. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 485, <GEN1> line 82. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 516, <GEN1> line 82. > ok > t/t140subgraph...........ok > t/t150xref...............ok > t/t160logicaldef.........ok > t/t170chadoxml...........sh: xsltproc: command not found > problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl > TMP.20625.llm.obo-1.xml > TMP.20625.llm.obo-2.xml at > GO/Parsers/base_parser.pm line 419 > GO::Parsers::base_parser::xsltproc('GO/xsl/oboxml_to_chadoxml.xsl', > 'TMP.20625.llm.obo-1.xml', 'TMP.20625.llm.obo-2.xml') called at > GO/Parsers/base_parser.pm line 385 > > GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x840f018)', > './t/data/llm.obo') called at t/t170chadoxml.t line 44 > dubious > Test returned status 127 (wstat 32512, 0x7f00) > DIED. FAILED tests 1-9 > Failed 9/9 tests, 0.00% okay > t/t180ncbi_taxonomy......ok > t/t200impliedlinks.......ok > t/t210cache..............Use of uninitialized value $txt in substitution > (s///) at GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 81. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 82. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 82. > Use of uninitialized value $txt in substitution (s///) at > GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 82. > ok > t/t220xref_esc...........ok > t/t230term_expression....ok > t/t240ga2obj.............ok > t/t260oborel_in_chado....sh: xsltproc: command not found > problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl > TMP.20634.go-with-local-id-mapping.obo-1.xml > > TMP.20634.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm > line 419 > GO::Parsers::base_parser::xsltproc('GO/xsl/oboxml_to_chadoxml.xsl', > 'TMP.20634.go-with-local-id-mapping.obo-1.xml', > 'TMP.20634.go-with-local-id-mapping.obo-2.xml') called at > GO/Parsers/base_parser.pm line 385 > > GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x840e670)', > './t/data/go-with-local-id-mapping.obo') called at t/t260oborel_in_chado.t > line 44 > dubious > Test returned status 127 (wstat 32512, 0x7f00) > DIED. FAILED tests 1-6 > Failed 6/6 tests, 0.00% okay > t/t270oborel_in_owl......sh: xsltproc: command not found > problem running: xsltproc GO/xsl/oboxml_to_owl.xsl > TMP.20637.go-with-local-id-mapping.obo-1.xml > > TMP.20637.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm > line 419 > GO::Parsers::base_parser::xsltproc('GO/xsl/oboxml_to_owl.xsl', > 'TMP.20637.go-with-local-id-mapping.obo-1.xml', > 'TMP.20637.go-with-local-id-mapping.obo-2.xml') called at > GO/Parsers/base_parser.pm line 385 > > GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x840e090)', > './t/data/go-with-local-id-mapping.obo') called at t/t270oborel_in_owl.t line > 44 > dubious > Test returned status 127 (wstat 32512, 0x7f00) > DIED. FAILED tests 1-4 > Failed 4/4 tests, 0.00% okay > Failed Test Stat Wstat Total Fail List of Failed > ------------------------------------------------------------------------------- > t/t170chadoxml.t 127 32512 9 18 1-9 > t/t260oborel_in_chado.t 127 32512 6 12 1-6 > t/t270oborel_in_owl.t 127 32512 4 8 1-4 > Failed 3/22 test scripts. 19/129 subtests failed. > Files=22, Tests=129, 6 wallclock secs ( 6.23 cusr + 0.29 csys = 6.52 CPU) > Failed 3/22 test programs. 19/129 subtests failed. > make[1]: *** [test_dynamic] Error 127 The full build log is available from: http://people.debian.org/~lucas/logs/2008/06/02 This rebuild was done with gcc 4.3 instead of gcc 4.2, because gcc 4.3 is now the default on most architectures (even if it's not the case on i386 yet). Consequently, many failures are caused by the switch to gcc 4.3. If you determine that this failure is caused by gcc 4.3, feel free to downgrade this bug to 'important' if your package is only built on i386, and this bug is specific to gcc 4.3 (i.e the package builds fine with gcc 4.2). A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on about 50 AMD64 nodes of the Grid'5000 platform, using a clean chroot containing a sid i386 environment. Internet was not accessible from the build systems. -- | Lucas Nussbaum | [EMAIL PROTECTED] http://www.lucas-nussbaum.net/ | | jabber: [EMAIL PROTECTED] GPG: 1024D/023B3F4F |
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--- Begin Message ---Source: libgo-perl Source-Version: 0.08-2 We believe that the bug you reported is fixed in the latest version of libgo-perl, which is due to be installed in the Debian FTP archive: libgo-perl_0.08-2.diff.gz to pool/main/libg/libgo-perl/libgo-perl_0.08-2.diff.gz libgo-perl_0.08-2.dsc to pool/main/libg/libgo-perl/libgo-perl_0.08-2.dsc libgo-perl_0.08-2_all.deb to pool/main/libg/libgo-perl/libgo-perl_0.08-2_all.deb A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [EMAIL PROTECTED], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Charles Plessy <[EMAIL PROTECTED]> (supplier of updated libgo-perl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [EMAIL PROTECTED]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Tue, 03 Jun 2008 10:07:45 +0900 Source: libgo-perl Binary: libgo-perl Architecture: source all Version: 0.08-2 Distribution: unstable Urgency: low Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]> Changed-By: Charles Plessy <[EMAIL PROTECTED]> Description: libgo-perl - perl modules for GO and other OBO ontologies Closes: 484201 Changes: libgo-perl (0.08-2) unstable; urgency=low . * debian/control: added xsltproc in the Build-Depends-Indep: field. (Closes: #484201) * debian/changelog: cosmetic changes. Checksums-Sha1: 72afa42799c5281a9aba27ec9be6e45e9ae5d2bb 1373 libgo-perl_0.08-2.dsc 2333db815b9de2a0b6b6efaba3549d0ccb1c1539 3894 libgo-perl_0.08-2.diff.gz a61ebab4038f214c84f5927da0471603d7597663 351390 libgo-perl_0.08-2_all.deb Checksums-Sha256: 5cd8c02d45c27f2eaed5dfca2cce080a43e27d456a976525453f5c13fc9463bb 1373 libgo-perl_0.08-2.dsc 7e0e28abc0aa124160cbabd8e814b44b7d97122fa511cb2c952f02e0a2bd5f75 3894 libgo-perl_0.08-2.diff.gz 85998ac0a94421a9e786bf45faf9485396707bec9e074aa51915e283e98048d8 351390 libgo-perl_0.08-2_all.deb Files: 7ae00a99d9dc1eeab07c37e0e9092d88 1373 perl optional libgo-perl_0.08-2.dsc 9fadb955cd4bc3d5e37e9d58d2fc90c6 3894 perl optional libgo-perl_0.08-2.diff.gz c3cb30b67bd7857b7eb9d890a75ad85c 351390 perl optional libgo-perl_0.08-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.6 (GNU/Linux) iD8DBQFIRKGfdYl1krr+x/IRAmd/AKCMKuz0klAkZPYTDO1JwPMkgAiR9ACbBriM gNH4liz5U1kF8mLRMGHmGpE= =GrI3 -----END PGP SIGNATURE-----
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