Your message dated Sun, 01 Nov 2009 09:50:39 +0000
with message-id <[email protected]>
and subject line Bug#552821: fixed in wise 2.4.1-8
has caused the Debian Bug report #552821,
regarding wise: FTBFS: sqio.c:232: error: conflicting types for 'getline'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
552821: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=552821
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: wise
Version: 2.4.1-7
Severity: serious
User: [email protected]
Usertags: qa-ftbfs-20091028 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
In eglibc <= 2.9, getline was only defined if _GNU_SOURCE was defined.
In eglibc 2.10, getline is always defined (since it became a standard in
POSIX2008). The problem is that your package already has a function
named getline(), which now conflicts with glibc's. You need to rename
your function to something else.
Ubuntu already fixed many occurences of your problem, so it is possible
that an Ubuntu patch is available for your package. Look at the PTS to
find out.
Relevant part:
> cc -c -O3 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -c sqio.c
>
> sqio.c:232: error: conflicting types for 'getline'
> /usr/include/stdio.h:651: error: previous declaration of 'getline' was here
> make[2]: *** [sqio.o] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2009/10/28/wise_2.4.1-7_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| [email protected] http://www.lucas-nussbaum.net/ |
| jabber: [email protected] GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: wise
Source-Version: 2.4.1-8
We believe that the bug you reported is fixed in the latest version of
wise, which is due to be installed in the Debian FTP archive:
wise-doc_2.4.1-8_all.deb
to main/w/wise/wise-doc_2.4.1-8_all.deb
wise_2.4.1-8.diff.gz
to main/w/wise/wise_2.4.1-8.diff.gz
wise_2.4.1-8.dsc
to main/w/wise/wise_2.4.1-8.dsc
wise_2.4.1-8_i386.deb
to main/w/wise/wise_2.4.1-8_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Philipp Benner <[email protected]> (supplier of updated wise package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 31 Oct 2009 21:25:52 +0000
Source: wise
Binary: wise wise-doc
Architecture: source all i386
Version: 2.4.1-8
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Philipp Benner <[email protected]>
Description:
wise - comparison of biopolymers, commonly DNA and protein sequences
wise-doc - documentation for the wise package
Closes: 552821
Changes:
wise (2.4.1-8) unstable; urgency=low
.
* Fixed conflicting definitions of getline(). (Closes: #552821)
* Added README.source.
* Standards version 3.8.3.
* Fixed spelling error in package description.
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