Your message dated Mon, 14 Mar 2011 01:02:13 +0000
with message-id <[email protected]>
and subject line Bug#614447: fixed in odin 1.8.3-1
has caused the Debian Bug report #614447,
regarding odin: FTBFS: ld: cannot find -lg2c
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
614447: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614447
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: odin
Version: 1.8.1-3
Severity: serious
Tags: squeeze sid
User: [email protected]
Usertags: qa-ftbfs-20110221 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not
> for C
> configure:7899: $? = 0
> dpkg-buildpackage: error: debian/rules build gave error exit status 2
> configure:7912: result: no
> configure:7927: checking for gcc option to produce PIC
> configure:8159: result: -fPIC
> configure:8167: checking if gcc PIC flag -fPIC works
> configure:8185: gcc -c -g -O2 -fPIC -DPIC conftest.c >&5
> configure:8189: $? = 0
> configure:8202: result: yes
> configure:8230: checking if gcc static flag -static works
> configure:8258: result: yes
> configure:8268: checking if gcc supports -c -o file.o
> configure:8289: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
> configure:8293: $? = 0
> configure:8315: result: yes
> configure:8341: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64)
> supports shared libraries
> configure:9322: result: yes
> configure:9343: checking whether -lc should be explicitly linked in
> configure:9348: gcc -c -g -O2 conftest.c >&5
> configure:9351: $? = 0
> configure:9366: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o
> conftest 2\>\&1 \| grep -lc \>/dev/null 2\>\&1
> configure:9369: $? = 0
> configure:9381: result: no
> configure:9389: checking dynamic linker characteristics
> configure:10003: result: GNU/Linux ld.so
> configure:10027: checking how to hardcode library paths into programs
> configure:10052: result: immediate
> configure:10066: checking whether stripping libraries is possible
> configure:10071: result: yes
> configure:10873: checking if libtool supports shared libraries
> configure:10875: result: yes
> configure:10878: checking whether to build shared libraries
> configure:10899: result: yes
> configure:10902: checking whether to build static libraries
> configure:10906: result: yes
> configure:11000: creating libtool
> configure:11593: checking for ld used by g++
> configure:11660: result: /usr/bin/ld -m elf_x86_64
> configure:11669: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
> configure:11684: result: yes
> configure:11735: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64)
> supports shared libraries
> configure:12681: result: yes
> configure:12698: g++ -c -O3 -fno-tree-vectorize -g -O2 conftest.cpp >&5
> configure:12701: $? = 0
> configure:12857: checking for g++ option to produce PIC
> configure:13141: result: -fPIC
> configure:13149: checking if g++ PIC flag -fPIC works
> configure:13167: g++ -c -O3 -fno-tree-vectorize -g -O2 -fPIC -DPIC
> conftest.cpp >&5
> configure:13171: $? = 0
> configure:13184: result: yes
> configure:13212: checking if g++ static flag -static works
> configure:13240: result: yes
> configure:13250: checking if g++ supports -c -o file.o
> configure:13271: g++ -c -O3 -fno-tree-vectorize -g -O2 -o out/conftest2.o
> conftest.cpp >&5
> configure:13275: $? = 0
> configure:13297: result: yes
> configure:13323: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64)
> supports shared libraries
> configure:13352: result: yes
> configure:13419: checking dynamic linker characteristics
> configure:13981: result: GNU/Linux ld.so
> configure:14005: checking how to hardcode library paths into programs
> configure:14030: result: immediate
> configure:20305: checking for sin in -lm
> configure:20340: g++ -o conftest -O3 -fno-tree-vectorize -g -O2
> conftest.cpp -lm >&5
> configure:20346: $? = 0
> configure:20364: result: yes
> configure:20372: checking for dlopen in -ldl
> configure:20407: g++ -o conftest -O3 -fno-tree-vectorize -g -O2
> conftest.cpp -ldl -lm >&5
> configure:20413: $? = 0
> configure:20431: result: yes
> configure:20441: checking for dlfcn.h
> configure:20446: result: yes
> configure:20574: checking for pthread_create in -lpthread
> configure:20609: g++ -o conftest -O3 -fno-tree-vectorize -g -O2
> conftest.cpp -lpthread -ldl -lm >&5
> configure:20615: $? = 0
> configure:20633: result: yes
> configure:20651: checking pthread.h usability
> configure:20668: g++ -c -O3 -fno-tree-vectorize -g -O2 conftest.cpp >&5
> configure:20674: $? = 0
> configure:20688: result: yes
> configure:20692: checking pthread.h presence
> configure:20707: g++ -E conftest.cpp
> configure:20713: $? = 0
> configure:20727: result: yes
> configure:20755: checking for pthread.h
> configure:20762: result: yes
> configure:20776: checking for main in -lz
> configure:20805: g++ -o conftest -O3 -fno-tree-vectorize -g -O2
> conftest.cpp -lz -lpthread -ldl -lm >&5
> configure:20811: $? = 0
> configure:20829: result: yes
> configure:20847: checking zlib.h usability
> configure:20864: g++ -c -O3 -fno-tree-vectorize -g -O2 conftest.cpp >&5
> configure:20870: $? = 0
> configure:20884: result: yes
> configure:20888: checking zlib.h presence
> configure:20903: g++ -E conftest.cpp
> configure:20909: $? = 0
> configure:20923: result: yes
> configure:20951: checking for zlib.h
> configure:20958: result: yes
> configure:20971: checking for main in -lgslcblas
> configure:21000: g++ -o conftest -O3 -fno-tree-vectorize -g -O2
> conftest.cpp -lgslcblas -lz -lpthread -ldl -lm >&5
> configure:21006: $? = 0
> configure:21024: result: yes
> configure:21030: checking for gsl_multifit_fdfsolver_iterate in -lgsl
> configure:21065: g++ -o conftest -O3 -fno-tree-vectorize -g -O2
> conftest.cpp -lgsl -lgslcblas -lz -lpthread -ldl -lm >&5
> configure:21071: $? = 0
> configure:21089: result: yes
> configure:21107: checking gsl/gsl_multifit_nlin.h usability
> configure:21124: g++ -c -O3 -fno-tree-vectorize -g -O2 conftest.cpp >&5
> configure:21130: $? = 0
> configure:21144: result: yes
> configure:21148: checking gsl/gsl_multifit_nlin.h presence
> configure:21163: g++ -E conftest.cpp
> configure:21169: $? = 0
> configure:21183: result: yes
> configure:21211: checking for gsl/gsl_multifit_nlin.h
> configure:21218: result: yes
> configure:21244: checking for i_indx in -lg2c
> configure:21279: g++ -o conftest -O3 -fno-tree-vectorize -g -O2
> conftest.cpp -lg2c -lgslcblas -lz -lpthread -ldl -lm >&5
> /usr/bin/ld: cannot find -lg2c
> collect2: ld returned 1 exit status
The full build log is available from:
http://people.debian.org/~lucas/logs/2011/02/21/odin_1.8.1-3_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| [email protected] http://www.lucas-nussbaum.net/ |
| jabber: [email protected] GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: odin
Source-Version: 1.8.3-1
We believe that the bug you reported is fixed in the latest version of
odin, which is due to be installed in the Debian FTP archive:
libodin-dev_1.8.3-1_amd64.deb
to main/o/odin/libodin-dev_1.8.3-1_amd64.deb
mitools_1.8.3-1_amd64.deb
to main/o/odin/mitools_1.8.3-1_amd64.deb
odin_1.8.3-1.debian.tar.gz
to main/o/odin/odin_1.8.3-1.debian.tar.gz
odin_1.8.3-1.dsc
to main/o/odin/odin_1.8.3-1.dsc
odin_1.8.3-1_amd64.deb
to main/o/odin/odin_1.8.3-1_amd64.deb
odin_1.8.3.orig.tar.gz
to main/o/odin/odin_1.8.3.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Hanke <[email protected]> (supplier of updated odin package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 13 Mar 2011 20:15:35 -0400
Source: odin
Binary: odin mitools libodin-dev
Architecture: source amd64
Version: 1.8.3-1
Distribution: unstable
Urgency: low
Maintainer: NeuroDebian Team <[email protected]>
Changed-By: Michael Hanke <[email protected]>
Description:
libodin-dev - static libraries and header for ODIN sequences
mitools - view, convert and perform basic maths with medical image datasets
odin - develop, simulate and run magnetic resonance sequences
Closes: 614447
Changes:
odin (1.8.3-1) unstable; urgency=low
.
* New upstream release.
* Change build-dependency from libblas-dev to libatlas-base-dev to ensure
availability of lapack (Closes: #614447).
* Updated maintainer email.
* Bumped Standards-version to 3.9.1, no changes necessary.
* Explicitly links against all required libs to address changes in the
behavior of Debian's linker.
* Update debian/copyright.
Checksums-Sha1:
63732f24e730ef3204bf8e8e169a77ace1a5fd3e 2110 odin_1.8.3-1.dsc
6d4cba00bf87e74978249b2384bbc1b5415f75ed 1906458 odin_1.8.3.orig.tar.gz
6952eeca36db738c285cf73de3fa126ff1aa84b2 5282 odin_1.8.3-1.debian.tar.gz
86f13b51d00932e226b557928095192a616944fc 1619292 odin_1.8.3-1_amd64.deb
84068696212ad553702f167693a0d6a356509ca3 2794758 mitools_1.8.3-1_amd64.deb
a80b799387a1b3dcef3af5333e9ef5b6f7997b21 4785084 libodin-dev_1.8.3-1_amd64.deb
Checksums-Sha256:
dcb58ae51f70923b2b8a5c8720c06ac10d2d4e1993a9316a7a93ad1a8b438d1d 2110
odin_1.8.3-1.dsc
d0cc4e29290b16d5b6cbd5ac6bf5a7ef674207a0efdb46324d0607a111cb0548 1906458
odin_1.8.3.orig.tar.gz
4095868050965639a1eddbd298e15977c3148653e440a010a96a393a89b516a4 5282
odin_1.8.3-1.debian.tar.gz
5afcdbbfc7aa518a652257f17f30aebd1e4f79ab6dad398a926085a9719f7c9f 1619292
odin_1.8.3-1_amd64.deb
90211e5de9fdbefa412d29acf43b4e2c9fd0ad0548d6385cfc9c7bd798e67685 2794758
mitools_1.8.3-1_amd64.deb
676818df8fdf55430f45b61a3fdb76c8c0ceec2383536faaa9e7a66fbda6c871 4785084
libodin-dev_1.8.3-1_amd64.deb
Files:
ba2f7e772d50cbbeaefc0c163819fc17 2110 science extra odin_1.8.3-1.dsc
5710418136b07289ea9913bf03df4cb3 1906458 science extra odin_1.8.3.orig.tar.gz
0459a7318d2b4f01acee2efac255806c 5282 science extra odin_1.8.3-1.debian.tar.gz
c1bbb091e51cd4872b89ade9a5b8abef 1619292 science extra odin_1.8.3-1_amd64.deb
f389806537ed219bd594de39c701c26b 2794758 science extra
mitools_1.8.3-1_amd64.deb
bb18895296904648f4d826003c1508d2 4785084 libdevel extra
libodin-dev_1.8.3-1_amd64.deb
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