Your message dated Fri, 20 Apr 2012 07:32:47 +0000 with message-id <e1sl8kl-0001gh...@franck.debian.org> and subject line Bug#653948: fixed in python-scipy 0.10.1+dfsg1-2 has caused the Debian Bug report #653948, regarding cephes_smirnov never returns on mips to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 653948: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=653948 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: python-scipy Version: 0.9.0+dfsg1-1+b2 Severity: serious Justification: fails to build from source (but built successfully in the past) I have ran into this while building pymvpa2 packages. on mips and mipsel it times out. I have troubleshooted it on gabrielli and I believe the following snippet should reproduce it (warns but returns fine after all on my laptop amd64): $> cat scipy-fit.py #!/usr/bin/python from numpy import array from scipy.stats.distributions import ksone print ksone.fit(array([ 0.14328729, 0.25490644, 0.13804094, 0.49698268, 0.1380734 , 0.42811492, -0.1115938 , -0.31843031, 0.09982475, -0.2468207 , -0.18507596, 0.38959311, 0.1849186 , -0.18565553, 0.06733078, -0.17673704, 0.00511101, -0.22497416, 0.3387749 , 0.14232358, 0.43253836, 0.02236981, -0.0588139 , -0.1195712 , 0.04046193, 0.04705898, -0.08171521, -0.10318616, 0.20083469, -0.4830056 , -0.14728118, 0.0365655 , -0.26662431, 0.16725666, -0.36558027, -0.09645765, 0.12076468, 0.30362135, -0.09133471, -0.26500672, -0.08376685, -0.0062318 , 0.26514818, -0.32202921, 0.2390966 , -0.1353733 , -0.0616442 , 0.15498897])) here is how it looks in gdb: (gdb) bt 10 #0 __ieee754_pow (x=nan(0x7ffffffffffff), y=-1716592327) at ../sysdeps/ieee754/dbl-64/e_pow.c:74 #1 0x2adb2860 in __pow (x=nan(0x7ffffffffffff), y=-1716592327) at w_pow.c:34 #2 0x2beb413c in cephes_smirnov () from /usr/lib/python2.6/dist-packages/scipy/special/_cephes.so #3 0x2be91fac in PyUFunc_dd_d_As_id_d () from /usr/lib/python2.6/dist-packages/scipy/special/_cephes.so #4 0x2b15fddc in _ftext () from /usr/lib/pymodules/python2.6/numpy/core/umath.so #5 0x2b131190 in ?? () from /usr/lib/pymodules/python2.6/numpy/core/multiarray.so warning: GDB can't find the start of the function at 0x2b13118e. GDB is unable to find the start of the function at 0x2b13118e and thus can't determine the size of that function's stack frame. This means that GDB may be unable to access that stack frame, or the frames below it. This problem is most likely caused by an invalid program counter or stack pointer. However, if you think GDB should simply search farther back from 0x2b13118e for code which looks like the beginning of a function, you can increase the range of the search using the `set heuristic-fence-post' command. (gdb) finish Run till exit from #0 __ieee754_pow (x=nan(0x7ffffffffffff), y=-1716592327) at ../sysdeps/ieee754/dbl-64/e_pow.c:74 0x2adb2860 in __pow (x=nan(0x7ffffffffffff), y=-1716592327) at w_pow.c:34 34 w_pow.c: No such file or directory. in w_pow.c Value returned is $1 = nan(0x8000000000000) (gdb) finish Run till exit from #0 0x2adb2860 in __pow (x=nan(0x7ffffffffffff), y=-1716592327) at w_pow.c:34 0x2beb413c in cephes_smirnov () from /usr/lib/python2.6/dist-packages/scipy/special/_cephes.so Value returned is $2 = nan(0x8000000000000) (gdb) finish Run till exit from #0 0x2beb413c in cephes_smirnov () from /usr/lib/python2.6/dist-packages/scipy/special/_cephes.so ^C Program received signal SIGINT, Interrupt. 0x2beb414c in cephes_smirnov () from /usr/lib/python2.6/dist-packages/scipy/special/_cephes.so (gdb) print "it stalled for more than a day and never returned from this function" -- System Information: Debian Release: wheezy/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.0.0-1-amd64 (SMP w/2 CPU cores) Locale: LANG=en_US, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages python-scipy depends on: ii libamd2.2.0 1:3.4.0-2 ii libatlas3gf-base [liblapack.so.3gf] 3.8.3-27 ii libblas3gf [libblas.so.3gf] 1.2.20110419-2 ii libc6 2.13-18 ii libgcc1 1:4.6.1-4 ii libgfortran3 4.6.1-4 ii liblapack3gf [liblapack.so.3gf] 3.3.1-1 ii libstdc++6 4.6.1-4 ii libumfpack5.4.0 1:3.4.0-2 ii python 2.7.2-9 ii python-numpy 1:1.5.1-3 ii python2.6 2.6.7-3 ii python2.7 2.7.2-8 Versions of packages python-scipy recommends: ii g++ [c++-compiler] 4:4.6.1-2 ii g++-4.3 [c++-compiler] 4.3.5-4 ii g++-4.4 [c++-compiler] 4.4.6-8 ii g++-4.6 [c++-compiler] 4.6.1-4 Versions of packages python-scipy suggests: ii python [python-profiler] 2.7.2-9 -- no debconf information
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--- Begin Message ---Source: python-scipy Source-Version: 0.10.1+dfsg1-2 We believe that the bug you reported is fixed in the latest version of python-scipy, which is due to be installed in the Debian FTP archive: python-scipy-dbg_0.10.1+dfsg1-2_amd64.deb to main/p/python-scipy/python-scipy-dbg_0.10.1+dfsg1-2_amd64.deb python-scipy_0.10.1+dfsg1-2.debian.tar.gz to main/p/python-scipy/python-scipy_0.10.1+dfsg1-2.debian.tar.gz python-scipy_0.10.1+dfsg1-2.dsc to main/p/python-scipy/python-scipy_0.10.1+dfsg1-2.dsc python-scipy_0.10.1+dfsg1-2_amd64.deb to main/p/python-scipy/python-scipy_0.10.1+dfsg1-2_amd64.deb A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 653...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Varun Hiremath <va...@debian.org> (supplier of updated python-scipy package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 20 Apr 2012 02:37:28 -0400 Source: python-scipy Binary: python-scipy python-scipy-dbg Architecture: source amd64 Version: 0.10.1+dfsg1-2 Distribution: unstable Urgency: low Maintainer: Debian Python Modules Team <python-modules-t...@lists.alioth.debian.org> Changed-By: Varun Hiremath <va...@debian.org> Description: python-scipy - scientific tools for Python python-scipy-dbg - scientific tools for Python - debugging symbols Closes: 648034 648036 651760 653948 Changes: python-scipy (0.10.1+dfsg1-2) unstable; urgency=low . * debian/control: - Recommends: python-imaging (Closes: #648036) - Recommends: python-dev (Closes: #651760) * debian/patches: - Add kolmogorov.diff, thanks to Yaroslav Halchenko (Closes: #653948) - Add kde.diff (Closes: #648034) Checksums-Sha1: b3219e46ba9a43e5e29a4cf13f9ba24d21e8a194 2452 python-scipy_0.10.1+dfsg1-2.dsc 795849bfecb35fc6dca9852a97791b8d7b14f507 10906 python-scipy_0.10.1+dfsg1-2.debian.tar.gz 2c5d6e599b8b859a473eddcd17ea53285a672e2a 11610694 python-scipy_0.10.1+dfsg1-2_amd64.deb 6a3e2759fae85251c7808b0a312e9da273a64291 26258410 python-scipy-dbg_0.10.1+dfsg1-2_amd64.deb Checksums-Sha256: 6ad4488992bf16eb6bf3416c380b1f03820f8c966bcab32e89c6449cb852aafa 2452 python-scipy_0.10.1+dfsg1-2.dsc bd7cd1120edbfbd138edd4ade7b975ad49cb302f48eead8f2630219fdeec5e47 10906 python-scipy_0.10.1+dfsg1-2.debian.tar.gz 8deb75883e81bf793a8f9337fc1b8b436eaf6869d8ff34b69143537eab3360ed 11610694 python-scipy_0.10.1+dfsg1-2_amd64.deb d07f69b681768722b8cdd3525255dbd01eec697cdd831d6735f32b296c1ae39f 26258410 python-scipy-dbg_0.10.1+dfsg1-2_amd64.deb Files: 18eea979acdbd1c584cab830283ccc53 2452 python extra python-scipy_0.10.1+dfsg1-2.dsc a5bd75415512fcbc9fc2a47ef49a026b 10906 python extra python-scipy_0.10.1+dfsg1-2.debian.tar.gz 0a819f4505dbfcabc0105243d0c0ea99 11610694 python extra python-scipy_0.10.1+dfsg1-2_amd64.deb a404bc96a41ac322a0386be07df6cca0 26258410 debug extra python-scipy-dbg_0.10.1+dfsg1-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) iQIcBAEBCgAGBQJPkQxnAAoJEHA3PPEpDbnOvMkP/3Ezf3ibP6EHUaiwDjcD9c91 DkrolISHJGWjzneyM64b0Dr7joXUDiaFsC6bvk50AP2G5zaCQyqAXgEDp5SaZMPh JaSXB20JianOltbi33FB+sB7eAHmcbq2OTCdAUlZpn6RJdqQfPCYalohsDXbkMJt 82jVZjs+K9giXP5fNEfinIk5I57EqAlzd1edf1IzHcMXHH+6MOyouuSBdVORo47W 6kiT5PInhhhCx0/40mX/BdsPSQ6dnla6cd+1+e8OMQvr3zyG4EdA3L65mRYA4Zac klxFGAyFS0tnWC2O3VfkKSK/zZhnC7aKYBzIsDf2TSPYm5jefLoQRAdrteDVyd0E 86PSXuydtNh1ffZZYNQ1OAiOXqfFTytppaCcnWMoRvzq8MhhUgGT7OJLsyo5mkNL I3CaY1wVH0NFCRiUjhT9lT9HkcIIBnsPdnvgmzjTHOLDB82uzAGcsh5UvhACFgHl cEfahnQEQFwRJAGmvN31d+yIvFSPuQtkQTVNTauX9bUzkr0OLaQaI8wmp3HzgChj gx3GCFWt5LPXWuKLCwVR8BJF0dtdGG6p0nuC/UG/HTBBa82RQYn32piJSObfvQG1 bzR+ndQC0iIg4WZ+b3s1EIMhX78K0svMUBzrmOi6eLG2EbPcpVTQCXGbfQTP7SKj w0mUSkq3rbJpOTXK1k8u =j3Hh -----END PGP SIGNATURE-----
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