Your message dated Fri, 07 Jun 2013 10:49:39 +0000
with message-id <[email protected]>
and subject line Bug#701322: fixed in mira 3.9.17-1
has caused the Debian Bug report #701322,
regarding mira: ftbfs with GCC-4.8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
701322: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=701322
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:mira
Version: 3.4.0.1-3
Severity: important
Tags: sid jessie
User: [email protected]
Usertags: ftbfs-gcc-4.8
The package fails to build in a test rebuild on at least amd64 with
gcc-4.8/g++-4.8, but succeeds to build with gcc-4.7/g++-4.7. The
severity of this report may be raised before the jessie release.
conftest.c:(.text+0x13f1): undefined reference to `yywrap'
The full build log can be found at:
http://people.debian.org/~doko/logs-20130217/gcc48/mira_3.4.0.1-3_unstable_gcc48.log
The last lines of the build log are at the end of this report.
To build with GCC 4.8, either set CC=gcc-4.8 CXX=g++-4.8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t experimental install g++ g++-4.7 g++-4.8 libc6-dev
The test rebuild was done with eglibc-2.17 and GCC-4.8, so some issues
might be caused by the updated glibc.
[...]
| }
|
| else
| {
| yy_cp = (yy_c_buf_p);
| goto yy_find_action;
| }
| }
|
| else switch ( yy_get_next_buffer( ) )
| {
| case EOB_ACT_END_OF_FILE:
| {
| (yy_did_buffer_switch_on_eof) = 0;
|
| if ( yywrap( ) )
| {
| /* Note: because we've taken care in
| * yy_get_next_buffer() to have set up
| * yytext, we can now set up
| * yy_c_buf_p so that if some total
| * hoser (like flex itself) wants to
| * call the scanner after we return the
| * YY_NULL, it'll still work - another
| * YY_NULL will get returned.
| */
| (yy_c_buf_p) = (yytext_ptr) +
YY_MORE_ADJ;
|
| yy_act = YY_STATE_EOF(YY_START);
| goto do_action;
| }
|
| else
| {
| if ( ! (yy_did_buffer_switch_on_eof) )
| YY_NEW_FILE;
| }
| break;
| }
|
| case EOB_ACT_CONTINUE_SCAN:
| (yy_c_buf_p) =
| (yytext_ptr) +
yy_amount_of_matched_text;
|
| yy_current_state = yy_get_previous_state( );
|
dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr
--includedir=${prefix}/include --mandir=${prefix}/share/man
--infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--libexecdir=${prefix}/lib/mira --disable-maintainer-mode
--disable-dependency-tracking returned exit code 1
make[1]: *** [override_dh_auto_configure] Error 25
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--- End Message ---
--- Begin Message ---
Source: mira
Source-Version: 3.9.17-1
We believe that the bug you reported is fixed in the latest version of
mira, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated mira package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 07 Jun 2013 08:34:21 +0200
Source: mira
Binary: mira-assembler mira-examples mira-doc
Architecture: source amd64 all
Version: 3.9.17-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
mira-assembler - Whole Genome Shotgun and EST Sequence Assembler
mira-doc - documentation for the mira assembler
mira-examples - files to experiment with the mira assembler
Closes: 701322
Changes:
mira (3.9.17-1) unstable; urgency=low
.
[ Thorsten Alteholz ]
* new upstream version
* debian/control: Standards-Version set to 3.9.4 (no changes)
* debian/control: DM-Upload-Allowed: removed
* debian/control: use dh 9
* debian/control: add dependency to libboost-iostreams-dev
* debian/control: improve extended descriptions
* debian/control: change VCS-tags according to new lintian
* debian/rules: get-orig-source added
* debian/watch: do not look at dev-versions
* debian/mira-doc.README.Debian: correct path to documentation
.
[ Dmitrijs Ledkovs ]
* Build depend on libboost-all-dev and libbz2-dev.
* Add boost-minimal patch, to add boost-libraries in final linking,
fixing FTBFS (Closes: #701322)
* Enable parallel builds, to speed up compilation.
.
[ Andreas Tille ]
* delete debian/README.source which is outdated / wrong
* debian/*.1: Wrote / reviewed manpages for all installed programs
* debian/miraSearchESTSNPs.1: Wrote manpage but mention that this
functionality is deactivated in version 3.9.17
* debian/mira-assembler.manpages: Simply install all manpages that can be
found
* Removed debian/obsolete.mira-assembler.install
* debian/control: The actual scripts do not contain the .tcl suffix
in our installation
* debian/rules:
- Currently miraSearchESTSNPs and miraclip claim to be deactivated so
why bothering installing these?
- Use xz compression for binaries
Checksums-Sha1:
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9f47d36708cafab750bcee9531657a0730721fd7 2124722
mira-assembler_3.9.17-1_amd64.deb
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Checksums-Sha256:
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mira_3.9.17-1.dsc
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mira_3.9.17.orig.tar.bz2
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mira_3.9.17-1.debian.tar.gz
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mira-assembler_3.9.17-1_amd64.deb
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mira-examples_3.9.17-1_all.deb
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mira-doc_3.9.17-1_all.deb
Files:
c45a2c88771384b22f59a82638a080d5 1723 science optional mira_3.9.17-1.dsc
109f3e31fbfa7787e78041ff3fdc8a2b 10373024 science optional
mira_3.9.17.orig.tar.bz2
437587290514a9802c9ebe767b719864 16116 science optional
mira_3.9.17-1.debian.tar.gz
2fd8e67bce3785c42dee76562da52932 2124722 science optional
mira-assembler_3.9.17-1_amd64.deb
5ccd66e13d44c9d95b09d6ecb1001676 6568548 science optional
mira-examples_3.9.17-1_all.deb
5210c718d2ce175a0126128d5c7b9429 2864672 doc optional mira-doc_3.9.17-1_all.deb
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--- End Message ---
