Your message dated Tue, 18 Jun 2013 12:48:11 +0000
with message-id <e1uovkv-0005k8...@franck.debian.org>
and subject line Bug#712359: fixed in biojava3-live 3.0.5-3
has caused the Debian Bug report #712359,
regarding biojava3-live: FTBFS: [javac]
/«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:93:
cannot find symbol
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
712359: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=712359
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: biojava3-live
Version: 3.0.5-2
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20130609 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[1]: Entering directory `/«PKGBUILDDIR»'
> cd biojava3-forester && ant jar
> Buildfile: /«PKGBUILDDIR»/biojava3-forester/build.xml
>
> compile:
> [mkdir] Created dir: /«PKGBUILDDIR»/build/biojava3-forester/classes
> [mkdir] Created dir: /«PKGBUILDDIR»/dist
> [javac] /«PKGBUILDDIR»/biojava3-forester/build.xml:70: warning:
> 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
> to false for repeatable builds
> [javac] Compiling 332 source files to
> /«PKGBUILDDIR»/build/biojava3-forester/classes
> [javac]
> /«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:42:
> cannot find symbol
> [javac] symbol : class DefaultFontMapper
> [javac] location: package com.itextpdf.text.pdf
> [javac] import com.itextpdf.text.pdf.DefaultFontMapper;
> [javac] ^
> [javac]
> /«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:93:
> cannot find symbol
> [javac] symbol : class DefaultFontMapper
> [javac] location: class org.forester.archaeopteryx.PdfExporter
> [javac] final DefaultFontMapper mapper = new DefaultFontMapper();
> [javac] ^
> [javac]
> /«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:93:
> cannot find symbol
> [javac] symbol : class DefaultFontMapper
> [javac] location: class org.forester.archaeopteryx.PdfExporter
> [javac] final DefaultFontMapper mapper = new DefaultFontMapper();
> [javac] ^
> [javac] Note: Some input files use unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] 3 errors
>
> BUILD FAILED
> /«PKGBUILDDIR»/biojava3-forester/build.xml:70: Compile failed; see the
> compiler error output for details.
>
> Total time: 13 seconds
> make[1]: *** [override_dh_auto_build] Error 1
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2013/06/09/biojava3-live_3.0.5-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: biojava3-live
Source-Version: 3.0.5-3
We believe that the bug you reported is fixed in the latest version of
biojava3-live, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 712...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <osal...@debian.org> (supplier of updated biojava3-live package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 18 Jun 2013 12:53:24 +0200
Source: biojava3-live
Binary: libbiojava3.0-java libbiojava3-java libbiojava3-java-doc
Architecture: source all
Version: 3.0.5-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osal...@debian.org>
Description:
libbiojava3-java - Java API to biological data and applications (default
version)
libbiojava3-java-doc - [Biology] Documentation for BioJava
libbiojava3.0-java - Java API to biological data and applications (version 3)
Closes: 712359
Changes:
biojava3-live (3.0.5-3) unstable; urgency=low
.
* Fix issue wit itext5 >= 5.4.1 related to API change (Closes: #712359)
* debian/build.xml: fork junit tests
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0fb4caca30e974718aa8f97b98f58ea27d067c3e 8916
biojava3-live_3.0.5-3.debian.tar.gz
2b6136fc274d7631a690ee2462c195db63059246 3491320
libbiojava3.0-java_3.0.5-3_all.deb
abc74d2d9ec5a33569b8864f7bdbc300916a20fa 3194 libbiojava3-java_3.0.5-3_all.deb
f8c320cea146b945aa99b6beba8902ab889d7244 2067530
libbiojava3-java-doc_3.0.5-3_all.deb
Checksums-Sha256:
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biojava3-live_3.0.5-3.dsc
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biojava3-live_3.0.5-3.debian.tar.gz
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libbiojava3.0-java_3.0.5-3_all.deb
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libbiojava3-java_3.0.5-3_all.deb
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libbiojava3-java-doc_3.0.5-3_all.deb
Files:
3812e533950abf043a405e008ab5b22f 2495 java optional biojava3-live_3.0.5-3.dsc
5393fa5b1c918218e067bc98542be038 8916 java optional
biojava3-live_3.0.5-3.debian.tar.gz
42fa95fd1f0f3090d515c5c129b8d81c 3491320 java optional
libbiojava3.0-java_3.0.5-3_all.deb
9feab4b153b1f8360099f774560e06a5 3194 java optional
libbiojava3-java_3.0.5-3_all.deb
a0ebfd94e94120e04e6f7efb7159c8d4 2067530 doc optional
libbiojava3-java-doc_3.0.5-3_all.deb
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