Your message dated Sun, 15 Sep 2013 03:48:31 +0000
with message-id <e1vl3k3-0002wn...@franck.debian.org>
and subject line Bug#722913: fixed in ncbi-tools6 6.1.20120620-6
has caused the Debian Bug report #722913,
regarding ncbi-tools6 FTBFS with new perl
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
722913: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=722913
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: ncbi-tools6
Severity: serious
Tags: patch
When trying to build ncbi-tools6 for raspbian it failed to build.
Further investigation by myself and JuN1x showed that it also failed to
build in both debian jessie amd64 and debian sid (I don't know which
architecture the sid test was done on).
We suspected it was caused by the new version of perl, gregora then
identified the problem as being some missing parenthesis.
<gregoa> plugwash, JuN1x: interesting that this wasn't caught by Dom's
rebuilds. anyway: (1) this is a quite typical failure with perl 5.18;
(2) the fix is easy: "$dir qw(doc/man debian/man)" -> "$dir (qw(doc/man
debian/man))" (add parentheses around the qw() stuff; (3) background:
https://metacpan.org/module/RJBS/perl-5.18.0/pod/perldelta.pod#qw-...-can-no-longer-be-used-as-parentheses
I added the parenthesis, wrote a changelog entry and uploaded to
raspbian. You can find a debdiff at
http://debdiffs.raspbian.org/main/n/ncbi-tools6/ncbi-tools6_6.1.20120620-5%2brpi1.debdiff
I do not currently intend to nmu this in debian.
--- End Message ---
--- Begin Message ---
Source: ncbi-tools6
Source-Version: 6.1.20120620-6
We believe that the bug you reported is fixed in the latest version of
ncbi-tools6, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 722...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <u...@debian.org> (supplier of updated ncbi-tools6 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 14 Sep 2013 23:16:12 -0400
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dev libncbi6-dbg ncbi-data ncbi-rrna-data
ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6b libvibrant6-dev
libvibrant6b-dbg
Architecture: source amd64 all
Version: 6.1.20120620-6
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <u...@debian.org>
Description:
blast2 - Basic Local Alignment Search Tool
libncbi6 - NCBI libraries for biology applications
libncbi6-dbg - NCBI libraries for biology applications (debugging symbols)
libncbi6-dev - NCBI libraries for biology applications (development files)
libvibrant6-dev - NCBI libraries for graphic biology applications (development
file
libvibrant6b - NCBI libraries for graphic biology applications
libvibrant6b-dbg - NCBI libraries for graphic biology applications (debugging
symbol
ncbi-data - Platform-independent data for the NCBI toolkit
ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
Closes: 722913
Changes:
ncbi-tools6 (6.1.20120620-6) unstable; urgency=low
.
* debian/installman: Eliminate for $var qw(...) syntax that broke with
Perl 5.18. (Closes: #722913.)
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