Your message dated Tue, 03 Dec 2013 21:22:50 +0000
with message-id <[email protected]>
and subject line Bug#730751: fixed in seqan 1.4.1-2
has caused the Debian Bug report #730751,
regarding seqan-apps and mason: error when trying to install together
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
730751: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=730751
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: mason,seqan-apps
Version: mason/1.0.0-12.3
Version: seqan-apps/1.4.01-1
Severity: serious
User: [email protected]
Usertags: edos-file-overwrite
Date: 2013-11-29
Architecture: amd64
Distribution: sid
Hi,
automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:
Preconfiguring packages ...
Selecting previously unselected package libgomp1:amd64.
(Reading database ... 10882 files and directories currently installed.)
Unpacking libgomp1:amd64 (from .../libgomp1_4.8.2-6_amd64.deb) ...
Selecting previously unselected package seqan-apps.
Unpacking seqan-apps (from .../seqan-apps_1.4.1-1_amd64.deb) ...
Selecting previously unselected package mason.
Unpacking mason (from .../mason_1.0.0-12.3_all.deb) ...
dpkg: error processing /var/cache/apt/archives/mason_1.0.0-12.3_all.deb
(--unpack):
trying to overwrite '/usr/share/man/man1/mason.1.gz', which is also in package
seqan-apps 1.4.1-1
dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
Processing triggers for man-db ...
Errors were encountered while processing:
/var/cache/apt/archives/mason_1.0.0-12.3_all.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.
Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):
/usr/bin/mason
/usr/share/man/man1/mason.1.gz
This bug has been filed against both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may then
also register in the BTS that the other package is affected by the bug.
-Ralf.
PS: for more information about the detection of file overwrite errors
of this kind see http://edos.debian.net/file-overwrites/.
--- End Message ---
--- Begin Message ---
Source: seqan
Source-Version: 1.4.1-2
We believe that the bug you reported is fixed in the latest version of
seqan, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated seqan package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 29 Nov 2013 11:39:01 +0100
Source: seqan
Binary: seqan-apps seqan-dev
Architecture: source amd64 all
Version: 1.4.1-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
seqan-apps - C++ library for the analysis of biological sequences
seqan-dev - C++ library for the analysis of biological sequences (development
Closes: 730751
Changes:
seqan (1.4.1-2) unstable; urgency=low
.
* debian/seqan-apps.links: s/mason/seqan_mason
Closes: #730751
Checksums-Sha1:
cf2b705ed993beda865b09be74bd0f0379d4ddb4 1441 seqan_1.4.1-2.dsc
6fdf3c661c4a35b5b45560e4444541fe6c02bef2 8029 seqan_1.4.1-2.debian.tar.gz
44db949162c8af00119df6029bdbd7755760a79f 6539712 seqan-apps_1.4.1-2_amd64.deb
3781727ac1da80d7f5785f5c92da7d1e1a652f29 2606868 seqan-dev_1.4.1-2_all.deb
Checksums-Sha256:
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seqan_1.4.1-2.dsc
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seqan_1.4.1-2.debian.tar.gz
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seqan-apps_1.4.1-2_amd64.deb
709890b29200a2a9aa9e5bf7d3d55035a7dc221322bbb11b94ccc1350eba9c00 2606868
seqan-dev_1.4.1-2_all.deb
Files:
a1d74adf7d9b512c099349a9e46d323e 1441 science optional seqan_1.4.1-2.dsc
5863df06a836c2e0117e86adbb04a3d5 8029 science optional
seqan_1.4.1-2.debian.tar.gz
3ad7b8f027406c87df153ad74f367a78 6539712 science optional
seqan-apps_1.4.1-2_amd64.deb
24622406ec23d405734b405e23e89dfc 2606868 libdevel optional
seqan-dev_1.4.1-2_all.deb
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--- End Message ---
