Your message dated Sun, 19 Jan 2014 07:33:24 +0000
with message-id <[email protected]>
and subject line Bug#735836: fixed in ssake 3.8.1-1
has caused the Debian Bug report #735836,
regarding ssake: FTBFS: Can't locate getopts.pl in @INC
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
735836: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=735836
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ssake
Version: 3.8-2
Severity: serious
Tags: jessie sid
User: [email protected]
Usertags: qa-ftbfs-20140114 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> fakeroot debian/rules binary
> test -x debian/rules
> dh_testroot
> dh_prep
> dh_installdirs -A
> mkdir -p "."
> Adding cdbs dependencies to debian/ssake.substvars
> dh_installdirs -pssake
> cp -a SSAKE /«PKGBUILDDIR»/debian/ssake/usr/bin/ssake
> cp -a tools/TQS.py /«PKGBUILDDIR»/debian/ssake/usr/bin/tqs
> Adding cdbs dependencies to debian/ssake-examples.substvars
> dh_installdirs -pssake-examples
> cp -a test/* /«PKGBUILDDIR»/debian/ssake-examples/usr/share/doc/ssake/examples
> dh_installdocs -pssake
> dh_installexamples -pssake
> dh_installman -pssake
> dh_installinfo -pssake
> dh_installmenu -pssake
> dh_installcron -pssake
> dh_installinit -pssake
> dh_installdebconf -pssake
> dh_installemacsen -pssake
> dh_installcatalogs -pssake
> dh_installpam -pssake
> dh_installlogrotate -pssake
> dh_installlogcheck -pssake
> dh_installchangelogs -pssake
> dh_installudev -pssake
> dh_lintian -pssake
> dh_bugfiles -pssake
> dh_install -pssake
> dh_link -pssake
> dh_installmime -pssake
> dh_installgsettings -pssake
> dh_installdocs -pssake-examples
> dh_installexamples -pssake-examples
> dh_installman -pssake-examples
> dh_installinfo -pssake-examples
> dh_installmenu -pssake-examples
> dh_installcron -pssake-examples
> dh_installinit -pssake-examples
> dh_installdebconf -pssake-examples
> dh_installemacsen -pssake-examples
> dh_installcatalogs -pssake-examples
> dh_installpam -pssake-examples
> dh_installlogrotate -pssake-examples
> dh_installlogcheck -pssake-examples
> dh_installchangelogs -pssake-examples
> dh_installudev -pssake-examples
> dh_lintian -pssake-examples
> dh_bugfiles -pssake-examples
> dh_install -pssake-examples
> dh_link -pssake-examples
> dh_installmime -pssake-examples
> dh_installgsettings -pssake-examples
> dh_strip -pssake
> dh_compress -pssake
> dh_fixperms -pssake
> dh_makeshlibs -pssake
> dh_strip -pssake-examples
> dh_compress -pssake-examples
> dh_fixperms -pssake-examples
> dh_makeshlibs -pssake-examples
> dh_installdeb -pssake
> dh_perl -pssake
> dh_shlibdeps -pssake
> dh_installdeb -pssake-examples
> dh_perl -pssake-examples
> dh_shlibdeps -pssake-examples
> dh_gencontrol -pssake
> dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in
> input data in general section of control info file
> dh_md5sums -pssake
> dh_builddeb -pssake
> dpkg-deb: building package `ssake' in `../ssake_3.8-2_all.deb'.
> cp -a /«PKGBUILDDIR»/debian/ssake-examples/usr/share/doc/ssake/examples/*
> /tmp/tmp.iBZ8b8h671
> cd /tmp/tmp.iBZ8b8h671 && gunzip *.gz &&
> /«PKGBUILDDIR»/debian/ssake/usr/bin/ssake -f Herpesvirus_3.60kb.reads.fa -m
> 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun
> Can't locate getopts.pl in @INC (@INC contains: /etc/perl
> /usr/local/lib/perl/5.18.2 /usr/local/share/perl/5.18.2 /usr/lib/perl5
> /usr/share/perl5 /usr/lib/perl/5.18 /usr/share/perl/5.18
> /usr/local/lib/site_perl .) at /«PKGBUILDDIR»/debian/ssake/usr/bin/ssake line
> 52.
> make: *** [binary/ssake] Error 2
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2014/01/14/ssake_3.8-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: ssake
Source-Version: 3.8.1-1
We believe that the bug you reported is fixed in the latest version of
ssake, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated ssake package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 18 Jan 2014 16:02:43 +0100
Source: ssake
Binary: ssake ssake-examples
Architecture: source all
Version: 3.8.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
ssake - genomics application for assembling millions of very short DNA se
ssake-examples - example data for SSAKE, a genomic assembler of short reads
Closes: 735836
Changes:
ssake (3.8.1-1) unstable; urgency=medium
.
* New upstream version
Closes: #735836
* debian/control:
- cme fix dpkg-control
- debhelper 9
* debian/rules: cdbs -> dh
* debian/watch: fixed to report last version
* add autopkgtest
Checksums-Sha1:
56b906abe73686347ac2fc9e369fc2b25f596ccd 1396 ssake_3.8.1-1.dsc
51611147abf282f041c553cc7b4e26d2b81e6588 2327553 ssake_3.8.1.orig.tar.gz
42457a468130ffc61fea94bd4921fe20ed9623e5 5656 ssake_3.8.1-1.debian.tar.xz
8fa91c27ab54fe58e991595d479894d16daf22ab 39938 ssake_3.8.1-1_all.deb
5f8d5c77c3ef296965b4e060e22c5b4b3626e2d2 2174568 ssake-examples_3.8.1-1_all.deb
Checksums-Sha256:
48dc83813f87818fc5b467ada22a4c473c76d3a00871aaa94bdd2ed08c3ed26c 1396
ssake_3.8.1-1.dsc
818031f6b2462ff40dc598deb1bafc44db2017bad5a83436b3fba4a13b1c815c 2327553
ssake_3.8.1.orig.tar.gz
6838a52b2f3c3d013380768d273351322aa3c48c85f3aadb9c53dddff5a28670 5656
ssake_3.8.1-1.debian.tar.xz
cd9105bb41e5141a2612548a37994578405a51e27550789d196320e580ae08ba 39938
ssake_3.8.1-1_all.deb
db414a7197e580e9ecb27d9cec5218ed3d267fd165ed6c749f54fc184d90ff43 2174568
ssake-examples_3.8.1-1_all.deb
Files:
7127f1b50b82f89f7c5cc950d288e8d9 1396 science optional ssake_3.8.1-1.dsc
44efc9dfe719823e7da34e06052ec2a9 2327553 science optional
ssake_3.8.1.orig.tar.gz
7c9cf01fb921f0e8d330fd1dd80e5f0a 5656 science optional
ssake_3.8.1-1.debian.tar.xz
f501f5bf107f2afdbfc03e1c23e4922e 39938 science optional ssake_3.8.1-1_all.deb
897891d9a4916ae04d9d5f3476641ca4 2174568 science optional
ssake-examples_3.8.1-1_all.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
iEYEARECAAYFAlLbfVYACgkQYDBbMcCf01rFnwCePsKec2lmFHCCS9F8Henb64lQ
+QkAn3NdmbqyFQ+L2Ud4NuWSDm4JosId
=9m5k
-----END PGP SIGNATURE-----
--- End Message ---
