Your message dated Thu, 02 Jul 2015 21:36:30 +0000
with message-id <[email protected]>
and subject line Bug#790667: fixed in ncbi-blast+ 2.2.30-4
has caused the Debian Bug report #790667,
regarding FTBFS with GCC 5 on arm64: error: narrowing conversion
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
790667: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=790667
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: ncbi-blast+
Version: 2.2.30-3
Severity: serious
User: [email protected]
Usertags: ftbfs-gcc-5
This package fails to compile with GCC 5 on ARM64. The error doesn't
show up on amd64.
> sbuild (Debian sbuild) 0.64.1 (13 Oct 2013) on m400-c4n1.hlinux.usa.hp.com
...
> /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2
> -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG
> -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
> -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE
> -I/build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/BUILD/inc
> -I/build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/include
> /build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/src/util/histogram_binning.cpp
> -o histogram_binning.o
> In file included from
> /build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:30:0,
> from
> /build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/src/util/histogram_binning.cpp:43:
> /build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:
> In instantiation of 'const char bm::first_bit_table<true>::_idx [256]':
> /build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56:
> required from here
> /build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12:
> error: narrowing conversion of '-1' from 'int' to 'char' inside { }
> [-Wnarrowing]
> const char first_bit_table<T>::_idx[256] = {
> ^
> /build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.rules:52:
> recipe for target 'histogram_binning.o' failed
> make[3]: *** [histogram_binning.o] Error 1
> make[3]: Leaving directory
> '/build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/BUILD/build/util'
> FAILED: src/util/Makefile.util.lib
> make[3]: Entering directory
> '/build/ncbi-blast+-mkG3Rd/ncbi-blast+-2.2.30/c++/BUILD/build/util'
--
Martin Michlmayr
Linux for HP Helion OpenStack, Hewlett-Packard
--- End Message ---
--- Begin Message ---
Source: ncbi-blast+
Source-Version: 2.2.30-4
We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated ncbi-blast+ package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 02 Jul 2015 16:22:39 -0400
Source: ncbi-blast+
Binary: ncbi-blast+ ncbi-blast+-legacy
Architecture: source all amd64
Version: 2.2.30-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Description:
ncbi-blast+ - next generation suite of BLAST sequence search tools
ncbi-blast+-legacy - NCBI Blast legacy call script
Closes: 790667
Changes:
ncbi-blast+ (2.2.30-4) unstable; urgency=medium
.
* d/patches/fix_compilation: Add an upstream patch to
include/util/bitset/bmconst.h to fix builds with GCC 5 on platforms
such as arm64 on which char is unsigned. (Closes: #790667.)
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