Your message dated Fri, 21 Aug 2015 07:24:13 +0000 with message-id <e1zsggp-0002ws...@franck.debian.org> and subject line Bug#795239: fixed in progressivemauve 1.2.0+4713-2 has caused the Debian Bug report #795239, regarding progressivemauve: FTBFS: undefined reference to `mems::gnAlignedSequences::getSupportedFormats[abi:cxx11]()' (and others) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 795239: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=795239 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: progressivemauve Severity: serious Version: 1.2.0+4713-1 This package currently FTBFS in sid: | g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DCOMMAND_LINE -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z,relro -o mauveAligner mauveAligner.o -lMems-1.6 -lboost_system -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome-1.3 -lMUSCLE-3.7 | mauveAligner.o: In function `print_usage(char const*)': | /«BUILDDIR»/progressivemauve-1.2.0+4713/src/mauveAligner.cpp:909: undefined reference to `mems::gnAlignedSequences::getSupportedFormats[abi:cxx11]()' | mauveAligner.o: In function `doAlignment(int, char**)': | /«BUILDDIR»/progressivemauve-1.2.0+4713/src/mauveAligner.cpp:376: undefined reference to `mems::MuscleInterface::SetExtraMuscleArguments(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' | /«BUILDDIR»/progressivemauve-1.2.0+4713/src/mauveAligner.cpp:365: undefined reference to `mems::FileSML::registerTempPath(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' (Many more errors). Full build log attached for convenience. Thanks, Martin -- Martin Pitt | http://www.piware.de Ubuntu Developer (www.ubuntu.com) | Debian Developer (www.debian.org)
progressivemauve_1.2.0+4713-1_amd64-20150812-1006.build.xz
Description: application/xz
--- End Message ---
--- Begin Message ---Source: progressivemauve Source-Version: 1.2.0+4713-2 We believe that the bug you reported is fixed in the latest version of progressivemauve, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 795...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated progressivemauve package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 20 Aug 2015 22:34:29 +0200 Source: progressivemauve Binary: progressivemauve Architecture: source amd64 Version: 1.2.0+4713-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: progressivemauve - multiple genome alignment algorithms Closes: 795239 Changes: progressivemauve (1.2.0+4713-2) unstable; urgency=medium . * Rebuild against gcc-5 ported libmems Closes: #795239 Checksums-Sha1: 2f40578b588cdf62ec9dd994723bdc82d8df0442 2243 progressivemauve_1.2.0+4713-2.dsc 6d7c48937dbbd6ea1ad0fb507c025430044bed4a 9188 progressivemauve_1.2.0+4713-2.debian.tar.xz 9a170381899b078fee753636092c075975808a14 849866 progressivemauve_1.2.0+4713-2_amd64.deb Checksums-Sha256: bf44af9d92694c7db21321ce9d2c58661dd345e7a627717d744fae9438b182ff 2243 progressivemauve_1.2.0+4713-2.dsc 7c5c61990dd8e2006ff145de5a54745f34c072a9ac7d3429b376a834fa0df37e 9188 progressivemauve_1.2.0+4713-2.debian.tar.xz d30a310fcb26154052567f23cbe4a75b8ec7929d606da66e06ee81e0c767427f 849866 progressivemauve_1.2.0+4713-2_amd64.deb Files: 2c8dd8beff158a759f503d6293e4c814 2243 science optional progressivemauve_1.2.0+4713-2.dsc 57a6eef5f2dfd53e21235e4393fe41a5 9188 science optional progressivemauve_1.2.0+4713-2.debian.tar.xz b53fdae658c30b4e86eeadc8f237945a 849866 science optional progressivemauve_1.2.0+4713-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJV1st0AAoJEFeKBJTRxkbRSooQAJSwdw8n6uIm/1gr/wbjGNW4 co0lifnIYB0bHxWKj59zY8IzqqGxFzJmdjr9Yy/G5n/UmhvykAftTbrOv64JdrSW Ky8TeC0Rpc3HHlltiUfQnfqRIeyGAvlRe5e6ZNMs8QECo+iJ3cED8nWo9ixbdNqH oSE+cHIgZXzi6MIcrGZJkdzf6SZd9wVvQs4O77kSzDR4c1aROoHJs7YDFrVF8gXt yUQa3iEalI1LIL5+5uMoB2Tjtq3i8mCUn/FFU+muBtxeIPvcJ+WCZHXQVyXdJGs8 GV+zuZvFwoAFTwBG/KfJPLt1J8Bv1VmB9jadTrSel6NIOOYQlpLzUEZzWQfrAxON +vC3m7hF5hjXiFzsGWj1DWNzADSajWVxONUuAYlwdaEJTQ+DxpRRlatHgnD8DoNr mp5dpb3wTZYn6ydTH5zj9KTrbqd8l1TRxKoLiG/Kiks6NpiOzMTUj4HehmgBSKkH KnedYqJiB6TystDPIq9ZthHyILloLNhe5LzSASU1jlo3G/EONiY+HcvZQT690a4x BU3xRAwYvIvn/9a6zfOMO1SF/Rh2Npy8zjc0Lj12kBq4MBDVdDThwI9OoLIv+9OP +KpSBtS7Ldfp1AYyY/EGWEgevEFb45C9C3JqqJGGz2XiQhalZQME8/TcfBhI7CGf ywvLk2nfeuwfMvOAt35M =RQvd -----END PGP SIGNATURE-----
--- End Message ---
