Your message dated Wed, 23 Dec 2015 06:50:10 +0000 with message-id <e1abdfs-0007x0...@franck.debian.org> and subject line Bug#808659: fixed in gromacs 5.1.1-2 has caused the Debian Bug report #808659, regarding gromacs: FTBFS: Could not find compiler set in environment variable CXX: /usr/bin/mpic++.mpich. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 808659: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=808659 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: gromacs Version: 5.1.1-1 Severity: serious Justification: fails to build from source Tags: sid User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, The package fails to build: -- Performing Test HAS_NO_DEPRECATED_REGISTER - Success -- Configuring done -- Generating done -- Build files have been written to: /gromacs-5.1.1/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich CXX=/usr/bin/mpic++.mpich cmake \ /gromacs-5.1.1 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_SIMD=SSE2 -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BUILD_MDRUN_ONLY=TRUE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU 5.3.1 CMake Error at /usr/share/cmake-3.4/Modules/CMakeDetermineCXXCompiler.cmake:56 (message): Could not find compiler set in environment variable CXX: /usr/bin/mpic++.mpich. Call Stack (most recent call first): CMakeLists.txt:45 (project) CMake Error: CMAKE_CXX_COMPILER not set, after EnableLanguage -- Configuring incomplete, errors occurred! See also "/gromacs-5.1.1/build/mpich/CMakeFiles/CMakeOutput.log". debian/rules:90: recipe for target 'configure-stamp' failed Full build log: https://reproducible.debian.net/rb-pkg/unstable/amd64/gromacs.html -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64)
--- End Message ---
--- Begin Message ---Source: gromacs Source-Version: 5.1.1-2 We believe that the bug you reported is fixed in the latest version of gromacs, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 808...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nicholas Breen <nbr...@debian.org> (supplier of updated gromacs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 22 Dec 2015 17:18:40 -0800 Source: gromacs Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev gromacs-mpich gromacs-openmpi Architecture: source all Version: 5.1.1-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Nicholas Breen <nbr...@debian.org> Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - Dummy package for libgromacs-dev gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization libgromacs-dev - GROMACS molecular dynamics sim, development kit libgromacs1 - GROMACS molecular dynamics sim, shared libraries Closes: 808659 Changes: gromacs (5.1.1-2) unstable; urgency=medium . * Replace compiler calls to "mpic++" with "mpicxx". MPICH >= 3.2 no longer ships mpic++ links. (Closes: #808659) * Remove obsolete build dependency on libgsl0-dev. Checksums-Sha1: 73368416f7c6442a829d4a0ae6c062d84183e55e 2824 gromacs_5.1.1-2.dsc bb6eb796dd96f72bd67a328772671dd8fcde875d 31840 gromacs_5.1.1-2.debian.tar.xz a6b6fe5a767048f829efd73251f0e2242b6945e9 22983702 gromacs-data_5.1.1-2_all.deb Checksums-Sha256: b0e125527e4bbefe98841f7fb950f55ac495facf0d5a6979d7122f49253b666e 2824 gromacs_5.1.1-2.dsc 369cad44c8ec28d98dc3f7fb7f6672fa4e4a3fe681c546f8909a15f18485d94d 31840 gromacs_5.1.1-2.debian.tar.xz 0299d657f6efe417ef918adbdad55d3f6922200d682088eff5766efb1036f10e 22983702 gromacs-data_5.1.1-2_all.deb Files: b510a1be80c23ceeb34f308c6e0476f1 2824 science extra gromacs_5.1.1-2.dsc 6b777c23a0cce9253e78c57003b84641 31840 science extra gromacs_5.1.1-2.debian.tar.xz f9afd4b9361c47a0c038905d6665035e 22983702 science extra gromacs-data_5.1.1-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIVAwUBVnpAA+5K/WnsZRCPAQgjmg/+M/BwQvF4CXH7qYaXpzv40BOI3PtavsnX sb7nH0dFiEnCLdcmBdN9ZvO4KW+WwToj1RBr9iCyz8YG+QOfJQMBMgYfQUuMK2O6 RmwRF1zgkpIg1A+yn9fJSjt3UgL31JmXmUcFjBENP1LV8z2Kmn4oKZlmi3cBmW9P oPapfh+mNvlbfSTAvOBUQoba+JOdlwbemGuOzMFEpHhfnm8F9iLxXnhfpX2OBeHW SP67o0vmSvqZEOM7URipM5Ao6GZz5vvCIfyBCMtbr1z5Fhhzc7whTdBe76elbapr AcQduGdwh3MJ/TKgIvFeUnh7W0YuAfBu0M1g7uxnvrrAWv9ZiUr0A0JwbgVDHVK6 DdM+4yR30Ju2Wf0H2BCGYrovO+O6FPkw2EWeSUWys16zEJftRhEQyRjl17HJPbCd haKAXGSFoEwcDMmS3Sqqp7H8d9eZDM0rjFtJ3eCOJu3Q2cJfVEE8HKXZBo4/ztWK mBpxnFFPV3kHhH2hlmCbkY7oMzlveEUCQ0hQU5bpn1K6MVf03Ueapn0oPwUi4otf WIspRRqnfaituAuF92FbN3DvmPFy+CVN/5zug8gtQo4/1WnhcCK06b8vcNyrhweQ 32Y3nQRJQ6nz2hrcnX2BPwgTWpVr8vB1iPYZjUfcwZbuYbNIDbAQF2dgpMt2GMEd DwKnSW1tiQE= =5I3r -----END PGP SIGNATURE-----
--- End Message ---
