On 15 February 2016 at 13:20, Chris Lamb wrote:
| Source: rjava
| Version: 0.9-8-1
| Severity: serious
| Justification: fails to build from source
| User: [email protected]
| Usertags: ftbfs
| X-Debbugs-Cc: [email protected]
|
| Dear Maintainer,
|
| rjava fails to build from source in unstable/amd64:
|
| [..]
|
| checking whether setjmp.h is POSIX.1 compatible... yes
| checking whether sigsetjmp is declared... yes
| checking whether siglongjmp is declared... yes
| checking Java support in R... present:
| interpreter : '/usr/lib/jvm/default-java/jre/bin/java'
| archiver : '/usr/lib/jvm/default-java/bin/jar'
| compiler : '/usr/lib/jvm/default-java/bin/javac'
| header prep.: '/usr/lib/jvm/default-java/bin/javah'
| cpp flags : '-I/usr/lib/jvm/default-java/include'
| java libs : '-L/usr/lib/jvm/default-java/jre/lib/amd64/server -ljvm'
| checking whether Java run-time works... yes
| checking whether -Xrs is supported... yes
| checking whether JNI programs can be compiled... configure: error: Cannot
compile a simple JNI program. See config.log for details.
|
| Make sure you have Java Development Kit installed and correctly registered
in R.
| If in doubt, re-run "R CMD javareconf" as root.
|
| ERROR: configuration failed for package 'rJava'
| * removing
'/home/lamby/temp/cdt.20160215130417.8nrJupJ3Ai/rjava-0.9-8/debian/r-cran-rjava/usr/lib/R/site-library/rJava'
| /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed
| make: *** [R_any_arch] Error 1
|
| [..]
|
| The full build log is attached.
Could be a change in default-java. Here is me trying to install a given
Java-using package from CRAN once r-cran-rjava has been loaded in a 'Debian
unstable' container
configure: checking whether gcc -std=gnu99 supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/lib/jvm/default-java/jre/bin/java'
archiver : '/usr/lib/jvm/default-java/bin/jar'
compiler : '/usr/lib/jvm/default-java/bin/javac'
header prep.: '/usr/lib/jvm/default-java/bin/javah'
cpp flags : '-I/usr/lib/jvm/default-java/include'
java libs : '-L/usr/lib/jvm/default-java/jre/lib/amd64/server -ljvm'
checking whether Java run-time works... ./configure: line 3736:
/usr/lib/jvm/default-java/jre/bin/java: No such file or directory
no
configure: error: Java interpreter '/usr/lib/jvm/default-java/jre/bin/java'
does not work
ERROR: configuration failed for package 'rJava'
* removing '/usr/local/lib/R/site-library/rJava'
The downloaded source packages are in
'/tmp/Rtmp8m9GKv/downloaded_packages'
Warning message:
In install.packages("rJava", repos = "http://cloud.r-project.org";) :
installation of package 'rJava' had non-zero exit status
>
I'll take another look later.
Dirk
|
|
| Regards,
|
| --
| ,''`.
| : :' : Chris Lamb
| `. `'` [email protected] / chris-lamb.co.uk
| `-
| x[DELETED ATTACHMENT rjava.0.9-8-1.unstable.amd64.log.txt.gz, Untyped binary
data]
--
http://dirk.eddelbuettel.com | @eddelbuettel | [email protected]
