Your message dated Tue, 22 Mar 2016 19:49:14 +0000
with message-id <[email protected]>
and subject line Bug#813261: fixed in jhdf 2.9-4
has caused the Debian Bug report #813261,
regarding jhdf: FTBFS: checking dependencies for HDF5 library... configure:
error: HDF5 library needs SZIP, SZIP not defined.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
813261: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813261
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: jhdf
Version: 2.9-3
Severity: serious
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs
X-Debbugs-Cc: [email protected]
Dear Maintainer,
jhdf fails to build from source in unstable/amd64:
[..]
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: source package jhdf
dpkg-buildpackage: source version 2.9-3
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Gilles Filippini <[email protected]>
dpkg-source --before-build jhdf-2.9
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
debian/rules:8: warning: overriding recipe for target
'debian/stamp-autotools-files'
/usr/share/cdbs/1/class/autotools-files.mk:62: warning: ignoring old recipe
for target 'debian/stamp-autotools-files'
test -x debian/rules
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . -k distclean
make[1]: Entering directory
'/home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9'
make[1]: *** No rule to make target 'distclean'.
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9'
/usr/share/cdbs/1/class/makefile.mk:55: recipe for target 'makefile-clean'
failed
make: [makefile-clean] Error 2 (ignored)
rm -f debian/stamp-autotools
rmdir --ignore-fail-on-non-empty .
rmdir: failed to remove '.': Invalid argument
/usr/share/cdbs/1/class/autotools.mk:52: recipe for target 'makefile-clean'
failed
make: [makefile-clean] Error 1 (ignored)
for i in ./config/config.guess ./config/config.sub ; do \
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
dh_clean
dh_clean: Pretending DH_COMPAT was set to 5
dh_clean: - this is a temporary measure to avoid FTBFS in packages
dh_clean: relying on cdbs to set debian/compat to 5 during the build
dh_clean: No compatibility level specified in debian/compat
dh_clean: This package will soon FTBFS; time to fix it!
rm -f debian/stamp-autotools-files
debian/rules build
debian/rules:8: warning: overriding recipe for target
'debian/stamp-autotools-files'
/usr/share/cdbs/1/class/autotools-files.mk:62: warning: ignoring old recipe
for target 'debian/stamp-autotools-files'
test -x debian/rules
mkdir -p "."
echo 5 >debian/compat
if test -e /usr/share/misc/config.guess ; then \
for i in ./config/config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i
; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./config/config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ;
\
fi ; \
done ; \
fi
autoreconf -i
aclocal: warning: autoconf input should be named 'configure.ac', not
'configure.in'
touch debian/stamp-autotools-files
chmod a+x /home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9/./configure
mkdir -p .
cd . && CFLAGS="-g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wall" CPPFLAGS="-Wdate-time
-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"
/home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9/./configure
--build=x86_64-linux-gnu
--prefix=/home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9/debian/tmp/
--includedir="\${prefix}/include" --mandir="\${prefix}/share/man"
--infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var
--libexecdir="\${prefix}/lib/jhdf" --srcdir=. --disable-maintainer-mode
--disable-dependency-tracking --disable-silent-rules
--with-jdk=/usr/lib/jvm/default-java/include/,/usr/lib/jvm/default-java/lib/
--with-classpath=/usr/lib/jvm/default-java/lib/
--with-javabin=/usr/lib/jvm/default-java/bin/ --with-libz=yes,/usr/lib
--with-libjpeg=yes,/usr/lib/
--with-hdf5=/usr/include/hdf5/serial,/usr/lib/x86_64-linux-gnu/hdf5/serial
--with-hdf4=/usr/include/hdf/,/usr/lib/ CC=gcc
configure: WARNING: unrecognized options: --disable-maintainer-mode,
--disable-dependency-tracking, --disable-silent-rules, --with-classpath
checking if tr works... yes
checking for gawk... no
checking for mawk... mawk
checking if expr works... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for ceil in -lm... yes
checking for rm... /bin/rm
checking for find... /usr/bin/find
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
FYI the target here is: x86_64-pc-linux-gnu
checking gzip compression... yes
zlib found: -lz
checking jpeg compression... yes
jpeg found: -ljpeg
checking szip compression... no
checking HDF4 library... yes
HDF4 found: -lmfhdf -ldf
checking dependencies for HDF4 library... OK
checking HDF5 library... yes
HDF5 found: -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5
checking dependencies for HDF5 library... configure: error: HDF5 library
needs SZIP, SZIP not defined.
/usr/share/cdbs/1/class/autotools.mk:42: recipe for target
'debian/stamp-autotools' failed
make: *** [debian/stamp-autotools] Error 1
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
jhdf.2.9-3.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: jhdf
Source-Version: 2.9-4
We believe that the bug you reported is fixed in the latest version of
jhdf, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gilles Filippini <[email protected]> (supplier of updated jhdf package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 22 Mar 2016 20:18:49 +0100
Source: jhdf
Binary: libjhdf5-java libjhdf5-jni libjhdf-doc libjhdf4-java libjhdf4-jni
hdfview
Architecture: source amd64 all
Version: 2.9-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<[email protected]>
Changed-By: Gilles Filippini <[email protected]>
Description:
hdfview - Java HDF Object viewer
libjhdf-doc - Java HDF Object Package - Documentation
libjhdf4-java - Java HDF4 Object Package
libjhdf4-jni - Java HDF4 Object Package (Java JNI library)
libjhdf5-java - Java HDF5 Object Package
libjhdf5-jni - Java HDF5 Object Package (Java JNI library)
Closes: 813261
Changes:
jhdf (2.9-4) unstable; urgency=medium
.
[ Andreas Tille ]
* Fix watch file
* machine readable copyright file
* Use Files-Excluded to strip *.jar files
* cme fix dpkg-control
.
[ Gilles Filippini ]
* Team upload
* Support linking against libsz (closes: #813261).
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libjhdf4-java_2.9-4_amd64.deb
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