Your message dated Thu, 21 Jul 2016 16:29:04 +0000 with message-id <[email protected]> and subject line Bug#830681: fixed in trilinos 12.6.3-2 has caused the Debian Bug report #830681, regarding trilinos-all-dev: Updating binutils breaks trilinos to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 830681: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=830681 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: trilinos-all-dev Version: 12.6.3-1 Severity: grave Justification: renders package unusable Dear Maintainer, The latest update of binutils to version 2.26.1-1 makes it imopssible to compile against trilinos. The linker complains /usr/bin/ld: warning: libbfd-2.26-system.so, needed by /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libtrilinos_teuchoscore.so, not found (try using -rpath or -rpath-link) /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libtrilinos_teuchoscore.so: undefined reference to "bfd_openr" /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libtrilinos_teuchoscore.so: riferimento non definito a "bfd_map_over_sections" /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libtrilinos_teuchoscore.so: riferimento non definito a "bfd_close" /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libtrilinos_teuchoscore.so: riferimento non definito a "bfd_check_format" /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libtrilinos_teuchoscore.so: riferimento non definito a "bfd_check_format_matches" /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libtrilinos_teuchoscore.so: riferimento non definito a "bfd_init" collect2: error: ld returned 1 exit status The new target library is $apt-file search libbfd-2.26 binutils: /usr/lib/x86_64-linux-gnu/libbfd-2.26.1-system.so A similar problem was solved for PETSc package recently, see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=828987 -- System Information: Debian Release: stretch/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.6.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=it_IT.UTF-8, LC_CTYPE=it_IT.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages trilinos-all-dev depends on: ii libtrilinos-amesos-dev 12.6.3-1 ii libtrilinos-amesos2-dev 12.6.3-1 ii libtrilinos-anasazi-dev 12.6.3-1 ii libtrilinos-aztecoo-dev 12.6.3-1 ii libtrilinos-belos-dev 12.6.3-1 ii libtrilinos-epetra-dev 12.6.3-1 ii libtrilinos-epetraext-dev 12.6.3-1 ii libtrilinos-galeri-dev 12.6.3-1 ii libtrilinos-globipack-dev 12.6.3-1 ii libtrilinos-ifpack-dev 12.6.3-1 ii libtrilinos-ifpack2-dev 12.6.3-1 ii libtrilinos-intrepid-dev 12.6.3-1 ii libtrilinos-isorropia-dev 12.6.3-1 ii libtrilinos-kokkos-dev 12.6.3-1 ii libtrilinos-komplex-dev 12.6.3-1 ii libtrilinos-ml-dev 12.6.3-1 ii libtrilinos-moertel-dev 12.6.3-1 ii libtrilinos-muelu-dev 12.6.3-1 ii libtrilinos-nox-dev 12.6.3-1 ii libtrilinos-optipack-dev 12.6.3-1 ii libtrilinos-pamgen-dev 12.6.3-1 ii libtrilinos-phalanx-dev 12.6.3-1 ii libtrilinos-pike-dev 12.6.3-1 ii libtrilinos-piro-dev 12.6.3-1 ii libtrilinos-pliris-dev 12.6.3-1 ii libtrilinos-rol-dev 12.6.3-1 ii libtrilinos-rtop-dev 12.6.3-1 ii libtrilinos-rythmos-dev 12.6.3-1 ii libtrilinos-sacado-dev 12.6.3-1 ii libtrilinos-shards-dev 12.6.3-1 ii libtrilinos-shylu-dev 12.6.3-1 ii libtrilinos-stokhos-dev 12.6.3-1 ii libtrilinos-stratimikos-dev 12.6.3-1 ii libtrilinos-teko-dev 12.6.3-1 ii libtrilinos-teuchos-dev 12.6.3-1 ii libtrilinos-thyra-dev 12.6.3-1 ii libtrilinos-tpetra-dev 12.6.3-1 ii libtrilinos-trilinoscouplings-dev 12.6.3-1 ii libtrilinos-triutils-dev 12.6.3-1 ii libtrilinos-xpetra-dev 12.6.3-1 ii libtrilinos-zoltan-dev 12.6.3-1 ii libtrilinos-zoltan2-dev 12.6.3-1 trilinos-all-dev recommends no packages. Versions of packages trilinos-all-dev suggests: pn trilinos-doc <none> -- no debconf information
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--- Begin Message ---Source: trilinos Source-Version: 12.6.3-2 We believe that the bug you reported is fixed in the latest version of trilinos, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nico Schlömer <[email protected]> (supplier of updated trilinos package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 21 Jul 2016 16:43:57 +0200 Source: trilinos Binary: trilinos-all-dev trilinos-dev libtrilinos-amesos12 libtrilinos-amesos-dev libtrilinos-amesos2-12 libtrilinos-amesos2-dev libtrilinos-anasazi12 libtrilinos-anasazi-dev libtrilinos-aztecoo12 libtrilinos-aztecoo-dev libtrilinos-belos12 libtrilinos-belos-dev libtrilinos-epetra12 libtrilinos-epetra-dev libtrilinos-epetraext12 libtrilinos-epetraext-dev libtrilinos-galeri12 libtrilinos-galeri-dev libtrilinos-globipack12 libtrilinos-globipack-dev libtrilinos-ifpack12 libtrilinos-ifpack-dev libtrilinos-ifpack2-12 libtrilinos-ifpack2-dev libtrilinos-intrepid12 libtrilinos-intrepid-dev libtrilinos-isorropia12 libtrilinos-isorropia-dev libtrilinos-kokkos12 libtrilinos-kokkos-dev libtrilinos-komplex12 libtrilinos-komplex-dev libtrilinos-ml12 libtrilinos-ml-dev libtrilinos-moertel12 libtrilinos-moertel-dev libtrilinos-muelu12 libtrilinos-muelu-dev libtrilinos-nox12 libtrilinos-nox-dev libtrilinos-optipack12 libtrilinos-optipack-dev libtrilinos-pamgen12 libtrilinos-pamgen-dev libtrilinos-phalanx12 libtrilinos-phalanx-dev libtrilinos-pike12 libtrilinos-pike-dev libtrilinos-piro12 libtrilinos-piro-dev libtrilinos-pliris12 libtrilinos-pliris-dev libtrilinos-rol12 libtrilinos-rol-dev libtrilinos-rtop12 libtrilinos-rtop-dev libtrilinos-rythmos12 libtrilinos-rythmos-dev libtrilinos-sacado12 libtrilinos-sacado-dev libtrilinos-shards12 libtrilinos-shards-dev libtrilinos-shylu12 libtrilinos-shylu-dev libtrilinos-stokhos12 libtrilinos-stokhos-dev libtrilinos-stratimikos12 libtrilinos-stratimikos-dev libtrilinos-teko12 libtrilinos-teko-dev libtrilinos-teuchos12 libtrilinos-teuchos-dev libtrilinos-thyra12 libtrilinos-thyra-dev libtrilinos-tpetra12 libtrilinos-tpetra-dev libtrilinos-trilinoscouplings12 libtrilinos-trilinoscouplings-dev libtrilinos-triutils12 libtrilinos-triutils-dev libtrilinos-xpetra12 libtrilinos-xpetra-dev libtrilinos-zoltan12 libtrilinos-zoltan-dev libtrilinos-zoltan2-12 libtrilinos-zoltan2-dev trilinos-doc Architecture: source Version: 12.6.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <[email protected]> Changed-By: Nico Schlömer <[email protected]> Description: libtrilinos-amesos-dev - direct sparse solver package - development files libtrilinos-amesos12 - direct sparse solver package - runtime files libtrilinos-amesos2-12 - next generation direct sparse solver package - runtime files libtrilinos-amesos2-dev - next generation direct sparse solver package - development files libtrilinos-anasazi-dev - large-scale eigenvalue algorithms - development files libtrilinos-anasazi12 - large-scale eigenvalue algorithms - runtime files libtrilinos-aztecoo-dev - object-oriented interface to the Aztec solver - development files libtrilinos-aztecoo12 - object-oriented interface to the Aztec solver - runtime files libtrilinos-belos-dev - iterative linear solvers - development files libtrilinos-belos12 - iterative linear solvers - runtime files libtrilinos-epetra-dev - basis package for linear algebra - development files libtrilinos-epetra12 - basis package for linear algebra - runtime files libtrilinos-epetraext-dev - extensions to the Epetra toolkit - development files libtrilinos-epetraext12 - extensions to the Epetra toolkit - runtime files libtrilinos-galeri-dev - generation of distributed linear systems - development files libtrilinos-galeri12 - generation of distributed linear systems - runtime files libtrilinos-globipack-dev - 1D globalization capabilities - development files libtrilinos-globipack12 - 1D globalization capabilities - runtime files libtrilinos-ifpack-dev - algebraic preconditioners - development files libtrilinos-ifpack12 - algebraic preconditioners - runtime files libtrilinos-ifpack2-12 - next generation algebraic preconditioners - runtime files libtrilinos-ifpack2-dev - next generation algebraic preconditioners - development files libtrilinos-intrepid-dev - compatible discretizations of PDEs - development files libtrilinos-intrepid12 - compatible discretizations of PDEs - runtime files libtrilinos-isorropia-dev - partitioning, load balancing, coloring of sparse matrices - devel libtrilinos-isorropia12 - partitioning, load balancing, coloring of sparse matrices - runti libtrilinos-kokkos-dev - Trilinos core kernels - development files libtrilinos-kokkos12 - Trilinos core kernels - runtime files libtrilinos-komplex-dev - complex linear solver package - development files libtrilinos-komplex12 - complex linear solver package - runtime files libtrilinos-ml-dev - multigrid preconditioning - development files libtrilinos-ml12 - multigrid preconditioning - runtime files libtrilinos-moertel-dev - mortar methods package - development files libtrilinos-moertel12 - mortar methods package - runtime files libtrilinos-muelu-dev - next generation multilevel preconditioner capabilities - developm libtrilinos-muelu12 - next generation multilevel preconditioner capabilities - runtime libtrilinos-nox-dev - robust solution of nonlinear equations - development files libtrilinos-nox12 - robust solution of nonlinear equations - runtime files libtrilinos-optipack-dev - Trilinos optimization algorithms - development files libtrilinos-optipack12 - Trilinos optimization algorithms - runtime files libtrilinos-pamgen-dev - hexahedral and quadrilateral mesh generator - development files libtrilinos-pamgen12 - hexahedral and quadrilateral mesh generator - runtime files libtrilinos-phalanx-dev - local field evaluation kernel - development files libtrilinos-phalanx12 - local field evaluation kernel - runtime files libtrilinos-pike-dev - physics integration kernels - development files libtrilinos-pike12 - physics integration kernels - runtime files libtrilinos-piro-dev - embedded nonlinear analysis package - development files libtrilinos-piro12 - embedded nonlinear analysis package - runtime files libtrilinos-pliris-dev - Trilinos dense solvers package - development files libtrilinos-pliris12 - Trilinos dense solvers package - runtime files libtrilinos-rol-dev - rapid optimization library - development files libtrilinos-rol12 - rapid optimization library - runtime files libtrilinos-rtop-dev - reductions/transformation operators - development files libtrilinos-rtop12 - reductions/transformation operators - runtime files libtrilinos-rythmos-dev - Trilinos transient integrator - development files libtrilinos-rythmos12 - Trilinos transient integrator - runtime files libtrilinos-sacado-dev - automatic differentiation for C++ applications - development file libtrilinos-sacado12 - automatic differentiation for C++ applications - runtime files libtrilinos-shards-dev - interoperability tools for PDE solving - development files libtrilinos-shards12 - interoperability tools for PDE solving - runtime files libtrilinos-shylu-dev - solving sparse linear systems - development files libtrilinos-shylu12 - solving sparse linear systems - runtime files libtrilinos-stokhos-dev - Trilinos uncertainty quantification package - development files libtrilinos-stokhos12 - Trilinos uncertainty quantification package - runtime files libtrilinos-stratimikos-dev - wrappers for linear solvers and preconditioners - development fil libtrilinos-stratimikos12 - wrappers for linear solvers and preconditioners - runtime files libtrilinos-teko-dev - block preconditioners - development files libtrilinos-teko12 - block preconditioners - runtime files libtrilinos-teuchos-dev - common tools for Trilinos - development files libtrilinos-teuchos12 - common tools for Trilinos - runtime files libtrilinos-thyra-dev - interoperability layer for numerical software - development files libtrilinos-thyra12 - interoperability layer for numerical software - runtime files libtrilinos-tpetra-dev - templated numerical linear algebra package - development files libtrilinos-tpetra12 - templated numerical linear algebra package - runtime files libtrilinos-trilinoscouplings-dev - combining Trilinos packages - development files libtrilinos-trilinoscouplings12 - combining Trilinos packages - runtime files libtrilinos-triutils-dev - utilities for Trilinos - development files libtrilinos-triutils12 - utilities for Trilinos - runtime files libtrilinos-xpetra-dev - conversion between Epetra and Teuchos objects - development files libtrilinos-xpetra12 - conversion between Epetra and Teuchos objects - runtime files libtrilinos-zoltan-dev - parallel dynamic load balancing - development files libtrilinos-zoltan12 - parallel dynamic load balancing - runtime files libtrilinos-zoltan2-12 - Trilinos next generation load balancing package - runtime files libtrilinos-zoltan2-dev - Trilinos next generation load balancing package - development fil trilinos-all-dev - object-oriented framework for large-scale problems - development trilinos-dev - object-oriented framework for large-scale problems - development trilinos-doc - object-oriented framework for large-scale problems - documentatio Closes: 830681 Changes: trilinos (12.6.3-2) unstable; urgency=medium . * Standards-Version: 3.9.8 * Migrate from trilinos-dbg to ddebs, bump debhelper build-dependency * remove binutils/libiberty dependency (Closes: #830681) * Update Vcs-Git Checksums-Sha1: 9350ae710be51f01238c53f00399a34cfd651652 8573 trilinos_12.6.3-2.dsc c3b07aaf38be37ef810d8b38e9da54d9c6829561 17520 trilinos_12.6.3-2.debian.tar.xz Checksums-Sha256: 4556d898abf90fa330150b9044ea9ec3cee2f950bb02d9787572e15e0aa5c001 8573 trilinos_12.6.3-2.dsc a231f6701eabc5aace0f93274b66a6fecabc34f70d5e8919481f270541611dd1 17520 trilinos_12.6.3-2.debian.tar.xz Files: 9b80a49a6f28758474055e715fde2f90 8573 science extra trilinos_12.6.3-2.dsc f4d9c83782f4ad911c1e55da2fe0e558 17520 science extra trilinos_12.6.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCgAGBQJXkPGKAAoJEK/P7I5mnOHCTKIP/RyyRfwTCW7S3MU90/h5Vfby 72qszLJfA/LSqHmzF9PRlGcyfCF69dQCM27FKCFNOYi+5FlTS2xSuOq/Rm1Bsfli e7lgmMvHOJtCDriuGsmEgDqaYKjLB2fd3kEStZ/8HpigBRN4w/2CTAHnFoq4mqoC O2xxdHT2iZeFiFIooMO30Q4SXVc+IxpKcXTsWOywRY6lXGLQQO7mM+krmtyMSKRU tVNFEL/zU7Zr09DxzWhbY+oT54I1t2quPyWTf90QUL56sfwnXq6ZnqR4EteI1tyE ilEgms28VngwvMU98WxxfREh4tzpYG3m8WBHGGq452MeA5chPhBFDiQxpVrMmrKX oF2AXGiCf3DfISk7ePkYj0tZaDweQZEQfriOYBLYKzpoaT1ZCEwMv3ZYuC2/ncGE 6vzheJKn7pjOP5vonAiXe2vochu897/BvdjSMHxd1IG52s3J2SwtiseZPZRB+5Nl yxCUqnb58IEnwpFoj409rbrEZ/pAUQ7AKiaNy+FFT8nE6eBs0yUdPMFPRxq8wTIv 0z6yxE5mk2bbSKB5LggcYyZYLq/EmCQ+eNkiGmKyvLo19xpZ8SSaAPPy1MVkb20P Ic2LORBfByMAbXxUrQwH5FJCmL6sfZa1CpEJUSMraZl8lkxAytSCFkQcl5wPWuYo fhGiIlj+uvmGlFwxvAdE =HT/J -----END PGP SIGNATURE-----
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