Your message dated Fri, 12 Aug 2016 09:52:55 +0000
with message-id <[email protected]>
and subject line Bug#831188: fixed in libgenome 1.3.1-9
has caused the Debian Bug report #831188,
regarding libgenome: FTBFS with GCC 6: gnDefs.cpp:8:20: error: 'int64
abs(int64)' conflicts with a previous declaration
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
831188: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=831188
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libgenome
Version: 1.3.1-8
Severity: serious
Tags: stretch sid
User: [email protected]
Usertags: qa-ftbfs-20160713 qa-ftbfs
Justification: FTBFS with GCC 6 on amd64
Hi,
During a rebuild of all packages in sid using the gcc-defaults package
available in experimental to make GCC default to version 6, your package failed
to build on amd64. For more information about GCC 6 and Stretch, see:
- https://wiki.debian.org/GCC6
- https://lists.debian.org/debian-devel-announce/2016/06/msg00007.html
Relevant part (hopefully):
> /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I..
> -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -c -o gnDefs.lo
> gnDefs.cpp
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time
> -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector-strong -Wformat
> -Werror=format-security -c gnDefs.cpp -fPIC -DPIC -o .libs/gnDefs.o
> gnDefs.cpp: In function 'int64 abs(int64)':
> gnDefs.cpp:8:20: error: 'int64 abs(int64)' conflicts with a previous
> declaration
> int64 abs( int64 a ){
> ^
> In file included from /usr/include/c++/6/stdlib.h:36:0,
> from ../libGenome/gnSetup.h:19,
> from ../libGenome/gnDefs.h:24,
> from gnDefs.cpp:5:
> /usr/include/c++/6/cstdlib:180:3: note: previous declaration 'long long int
> std::abs(long long int)'
> abs(long long __x) { return __builtin_llabs (__x); }
> ^~~
> make[3]: *** [gnDefs.lo] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2016/07/13/libgenome_1.3.1-8_unstable_gcc6.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: libgenome
Source-Version: 1.3.1-9
We believe that the bug you reported is fixed in the latest version of
libgenome, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libgenome package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 12 Aug 2016 10:52:24 +0200
Source: libgenome
Binary: libgenome-1.3-dev libgenome-1.3-0v5
Architecture: source amd64
Version: 1.3.1-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
libgenome-1.3-0v5 - toolkit for developing bioinformatic related software
libgenome-1.3-dev - toolkit for developing bioinformatic related software
(devel)
Closes: 831188
Changes:
libgenome (1.3.1-9) unstable; urgency=medium
.
* Add Multi-Arch: same and Pre-Depends: ${misc:Pre-Depends}
according to https://wiki.debian.org/Multiarch/Implementation
* Fix gcc-6.1 build issue
Closes: #831188
* hardening=+bindnow
* cme fix dpkg-control
* Fixed homepage
* Drop unused overrides
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libgenome-1.3-0v5_1.3.1-9_amd64.deb
59ed3bceab5fb928f4eda16e51cc7df7 172120 libdevel optional
libgenome-1.3-dev_1.3.1-9_amd64.deb
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