Your message dated Mon, 29 Aug 2016 10:25:42 +0000 with message-id <[email protected]> and subject line Bug#835224: fixed in pymol 1.8.2.1+dfsg-1.1 has caused the Debian Bug report #835224, regarding pymol: FTBFS in every autobuilder (No such file or directory) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 835224: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835224 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:pymol Version: 1.8.2.1+dfsg-1 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -A" (which is what the "Arch: all" autobuilder would do to build it) but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --with python2 --parallel dh_testdir -i -O--parallel dh_update_autotools_config -i -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<<BUILDDIR>>/pymol-1.8.2.1+dfsg' dh_auto_configure -Spython_distutils make[1]: Leaving directory '/<<BUILDDIR>>/pymol-1.8.2.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<<BUILDDIR>>/pymol-1.8.2.1+dfsg' dh_auto_build -Spython_distutils python setup.py build --force [... snipped ...] copying build/lib.linux-x86_64-2.7/chempy/champ/amber99.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy/champ creating /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/util.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/state.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/realtime.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/commands.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/__init__.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/water_residues.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/chempy creating /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/pmg_wx copying build/lib.linux-x86_64-2.7/pmg_wx/__init__.py -> /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/pmg_wx running install_egg_info Writing /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/pymol-1.8.2.1.egg-info creating /<<BUILDDIR>>/pymol-1.8.2.1+dfsg/debian/tmp/usr/bin debian/rules override_dh_install make[1]: Entering directory '/<<BUILDDIR>>/pymol-1.8.2.1+dfsg' pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2016/03/31> patch level 3 Babel <3.9r> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] (debian/pymol-ref-card.aux) ) (see the transcript file for additional information)</usr/share/texlive/texmf-d ist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fo nts/type1/public/amsfonts/cm/cmitt10.pfb></usr/share/texlive/texmf-dist/fonts/t ype1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu blic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am sfonts/cm/cmr12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/ cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9 .pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></ usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb> Output written on debian/pymol-ref-card.pdf (2 pages, 108274 bytes). Transcript written on debian/pymol-ref-card.log. sed -e s/@PYTHON_VERSION@/2.7/g < debian/pymol.launch.in > debian/pymol.launch dh_numpy dh_install data/shaders usr/lib/python2.7/dist-packages/pymol/data/ install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol install: cannot create regular file 'debian/pymol/usr/bin/pymol': No such file or directory debian/rules:37: recipe for target 'override_dh_install' failed make[1]: *** [override_dh_install] Error 1 make[1]: Leaving directory '/<<BUILDDIR>>/pymol-1.8.2.1+dfsg' debian/rules:14: recipe for target 'binary-indep' failed make: *** [binary-indep] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit status 2 -------------------------------------------------------------------------------- To reproduce, please try to build the package with "dpkg-buildpackage -A". This happens because debian/pymol/[...] does not exist, because pymol is arch-dependent and we are creating only arch-independent packages. To fix this, try splitting override_dh_install into override_dh_install-arch and override_dh_install-indep. BTW: Not even "dpkg-buildpackage -B" works: https://buildd.debian.org/status/package.php?p=pymol Once you make dpkg-buildpackage -B and dpkg-buildpackage -A to work again, the package would be suitable to be uploaded in source-only form. Thanks.
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--- Begin Message ---Source: pymol Source-Version: 1.8.2.1+dfsg-1.1 We believe that the bug you reported is fixed in the latest version of pymol, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Gianfranco Costamagna <[email protected]> (supplier of updated pymol package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 29 Aug 2016 10:47:59 +0200 Source: pymol Binary: pymol pymol-data Architecture: source Version: 1.8.2.1+dfsg-1.1 Distribution: unstable Urgency: medium Maintainer: Debichem Team <[email protected]> Changed-By: Gianfranco Costamagna <[email protected]> Description: pymol - Molecular Graphics System pymol-data - data files for PyMOL Closes: 835224 Changes: pymol (1.8.2.1+dfsg-1.1) unstable; urgency=medium . * Non-maintainer upload. * Fix FTBFS with dpkg-buildpackage -A (Closes: #835224) Checksums-Sha1: 92f84a816fcb7723d9d2f1f5773135a295e2e366 2152 pymol_1.8.2.1+dfsg-1.1.dsc afa0e8f9b7f68e6b6f946ca41c41c5e3db23e724 55464 pymol_1.8.2.1+dfsg-1.1.debian.tar.xz Checksums-Sha256: 5e2ab6be6b65b856ab7c192d26ead1d506c8c8b738aa8f00cca64434d2d7496f 2152 pymol_1.8.2.1+dfsg-1.1.dsc e80c8de0cfdc332847b9cbf1d06a795a3ffd3331c49580c74c293ffe152c53f9 55464 pymol_1.8.2.1+dfsg-1.1.debian.tar.xz Files: 9fbe4343dd97c25bf07a458669b5a5a8 2152 science optional pymol_1.8.2.1+dfsg-1.1.dsc 5ed4e1c4282eba03f577c33a96dab276 55464 science optional pymol_1.8.2.1+dfsg-1.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJXw/kqAAoJEPNPCXROn13ZNQMP/3MOzAYEzQwuPytlsVo8+C5i g/L0r6V3d3+vK7dzwk1DNKJJlrG9bOy6TbhyZVGHph+JrrpPNPb7PEh4X91hpk32 HUt+rLIfSqitqmYqorTuNgc7udPuYB19QUxg/c5fvgypPR7jT6vJPE0orgoWRuUJ bl07hd3/KjibOvDDaPnfLLks+71Z0WdbNjyueuJF2ZwkYuYjQ5Hw2AsLpCyvb9mL guLI6GAIwrs/MkryQKX8T3rXHiP/YUC6ERIogaPKibPhqwboDTRcHg45OHuQ6rYs atgHALg/0J8iHXaBJWlN2eKA5gJJOxlBnoc9HU/zoPFwRGoZ16O5Mv9SXN2ZL+Sm JITtyN7eHwy+uvcKh0oz3lUL6pB/7lKRs22/A00C/Nlyqg/EIYneGSVdg1GtZ0kl 5pdMF/LwvFvT1yls7uhXv+LBZrNR6TygehBiY7rmKEXZ9WlhOcPlQdowArej83Qa sx+FckkDEnjrnt/0mkD66nrFQjOKiOyaNJ8SaizQpYXzMKNy5sxXcx/r5wwztJsz ievuTSLu+cbVTVLnM7qx+p0eijqD7iFRARHicg94PCTUeJUxRjMVjtU/CzKYZOdD 3K4do6mVRk00i6ZWsH9WUF94wY+Z4NQd9dzxMtIQ0QMpMkazpIMLFgKm7a8WJbhZ IP6Q2QsX4kY6yAZV3XHk =D2D1 -----END PGP SIGNATURE-----
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