Package: src:genometools Version: 1.5.9+ds-2 Severity: serious Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -A" (which is what the "Arch: all" autobuilder would do to build it) but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --with python2 dh_testdir -i dh_update_autotools_config -i dh_auto_configure -i debian/rules override_dh_auto_build make[1]: Entering directory '/<<BUILDDIR>>/genometools-1.5.9+ds' faketime -f "`TZ=UTC date -d @1469271266 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make -j1 useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make[2]: Entering directory '/<<BUILDDIR>>/genometools-1.5.9+ds' [create obj/gt_config.h] [compile alphabet.o] [compile array.o] [... snipped ...] cp -r gtdata /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/bin test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core cp src/core/*_api.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended cp src/extended/*_api.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch cp src/annotationsketch/*_api.h \ /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr cp src/ltr/*_api.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr cp obj/gt_config.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools cp src/genometools.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib cp lib/libgenometools.a /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib cp lib/libgenometools.so.0 /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib ln -fs /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib/libgenometools.so.0 /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib/libgenometools.so [build config script install] sed -e 's!@CC@!cc!' -e 's!@CFLAGS@!-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/genometools-1.5.9+ds=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@CPPFLAGS@!-I\\"/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include\\" -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE!' \ -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/genometools-1.5.9+ds=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@LDFLAGS@!-L/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/local/lib!' \ -e 's!@LIBS@! -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3!' -e "s!@VERSION@!`cat VERSION`!" \ -e 's!@BUILDSTAMP@!"2016-08-31 16:47:11"!' \ -e 's!@SYSTEM@!Linux!' <src/genometools-config.in \ >/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/bin/genometools-config chmod 755 /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/bin/genometools-config bin/gt -createman /tmp/gtmanpages warning: skipping tool 'mgth' in iterator (not a GtTool object) warning: skipping tool 'mkfmindex' in iterator (not a GtTool object) warning: skipping tool 'suffixerator' in iterator (not a GtTool object) warning: skipping tool 'chkintegrity' in iterator (not a GtTool object) warning: skipping tool 'chksearch' in iterator (not a GtTool object) warning: skipping tool 'mkctxmap' in iterator (not a GtTool object) warning: skipping tool 'mkindex' in iterator (not a GtTool object) warning: skipping tool 'trsuftab' in iterator (not a GtTool object) test -d /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages rm -f /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages/* scripts/create_manpages /tmp/gtmanpages /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages .a2x: WARNING: --destination-dir option is only applicable to HTML based outputs a2x: ERROR: "xsltproc" --stringparam callout.graphics 0 --stringparam navig.graphics 0 --stringparam admon.textlabel 1 --stringparam admon.graphics 0 "/etc/asciidoc/docbook-xsl/manpage.xsl" "/<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages/gt.xml" returned non-zero exit status 6 Makefile:948: recipe for target 'manpages' failed make[2]: *** [manpages] Error 1 make[2]: Leaving directory '/<<BUILDDIR>>/genometools-1.5.9+ds' dh_auto_install: make -j1 install DESTDIR=/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp AM_UPDATE_INFO_DIR=no installmanpages useshared=yes x32=no 64bit=yes errorcheck=no prefix=/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr returned exit code 2 debian/rules:63: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 2 make[1]: Leaving directory '/<<BUILDDIR>>/genometools-1.5.9+ds' debian/rules:32: recipe for target 'binary-indep' failed make: *** [binary-indep] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit status 2 -------------------------------------------------------------------------------- This used to work in the past, so I would look for build-dependencies which may have changed their behaviour recently. Thanks.