Your message dated Sun, 16 Oct 2016 13:34:28 +0000 with message-id <[email protected]> and subject line Bug#840725: fixed in libhmsbeagle 2.1.2+20160831-2 has caused the Debian Bug report #840725, regarding libhmsbeagle: FTBFS and bd-uninstallable almost everywhere to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 840725: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=840725 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: libhmsbeagle Version: 2.1.2+20160525-1 Severity: serious Hi, Your package failed to build on i386 with: /«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h: In member function 'void opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, int, double, int*, Real)': /«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h:188:55: error: there are no arguments to 'malloc' that depend on a template parameter, so a declaration of 'malloc' must be available [-fpermissive] Real* hPtr = (Real*) malloc(sizeof(Real) * length); ^ Also, the package is bd-uninstallable everywhere else because libpoclu-dev is not available. See https://buildd.debian.org/status/package.php?p=libhmsbeagle Emilio -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (800, 'unstable'), (700, 'experimental'), (650, 'testing'), (500, 'unstable-debug') Architecture: amd64 (x86_64) Foreign Architectures: i386, armhf Kernel: Linux 4.7.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
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--- Begin Message ---Source: libhmsbeagle Source-Version: 2.1.2+20160831-2 We believe that the bug you reported is fixed in the latest version of libhmsbeagle, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated libhmsbeagle package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 16 Oct 2016 15:08:44 +0200 Source: libhmsbeagle Binary: libhmsbeagle-dev libhmsbeagle1v5 libhmsbeagle-java Architecture: source amd64 Version: 2.1.2+20160831-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle1v5 - High-performance lib for Bayesian and Maximum Likelihood phylogen Closes: 840725 Changes: libhmsbeagle (2.1.2+20160831-2) unstable; urgency=medium . * Skip tests on other architectures than amd64. Closes: #840725 Checksums-Sha1: 61826e279658b543954571625a4a6a392baca45f 2440 libhmsbeagle_2.1.2+20160831-2.dsc e587cc10e94952d0a2e20dc2e90b7f838da5bd3f 36028 libhmsbeagle_2.1.2+20160831-2.debian.tar.xz 6ce3cfc5ead6e06170ff5ed9086929b178a2020d 166198 libhmsbeagle-dev_2.1.2+20160831-2_amd64.deb c7103cb4b2d53a9f7212ff4759f694b9dae2fdc3 24028 libhmsbeagle-java_2.1.2+20160831-2_amd64.deb e0ddad84dde5b4d605067d95041e5368de548146 690386 libhmsbeagle1v5-dbgsym_2.1.2+20160831-2_amd64.deb 7f406b71103dd5eaa23993d9819f7d940c259baf 116354 libhmsbeagle1v5_2.1.2+20160831-2_amd64.deb Checksums-Sha256: caccd212bc8c4fd0f7efa0fbba10cbba81eb88dee561fa719d6d257c54bf80b6 2440 libhmsbeagle_2.1.2+20160831-2.dsc 1f7d0d22a381e5b5dd0d84ef448537b74832ac486942f4377d8d93b9af379fe0 36028 libhmsbeagle_2.1.2+20160831-2.debian.tar.xz c883d3439f0b345c428e6afb4b76fba529ccaf1c8bf11f3a4d651bfdf83c6ae3 166198 libhmsbeagle-dev_2.1.2+20160831-2_amd64.deb 882710dede356403b3c7b6bb1b2b36174b69ab6ce0134294b70845ea95937eda 24028 libhmsbeagle-java_2.1.2+20160831-2_amd64.deb ecbb4b2a46eda9f4d0c8103b2f7e60cb4467f42ce9119155e6fdd8a9a5748e4d 690386 libhmsbeagle1v5-dbgsym_2.1.2+20160831-2_amd64.deb b35cfdcd52f36c3766c60c1ca6a8e9ee1ef5f08fe207f56a3e8280a3fe804aac 116354 libhmsbeagle1v5_2.1.2+20160831-2_amd64.deb Files: 13d3d17f6cd3c3a7cfcdba074c8cc081 2440 libs optional libhmsbeagle_2.1.2+20160831-2.dsc 0085d9cd07ce7ddff3971e2850fcf8f6 36028 libs optional libhmsbeagle_2.1.2+20160831-2.debian.tar.xz ac1c1ac449af77e43fa83548c48aa25f 166198 libdevel optional libhmsbeagle-dev_2.1.2+20160831-2_amd64.deb 2c4634bb677d1105beea4e44286a0e27 24028 java optional libhmsbeagle-java_2.1.2+20160831-2_amd64.deb a22168336f887e8bc163d9c1062d7614 690386 debug extra libhmsbeagle1v5-dbgsym_2.1.2+20160831-2_amd64.deb a1b017646886dcc801ba967d5cb96988 116354 libs optional libhmsbeagle1v5_2.1.2+20160831-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQIuBAEBCAAYBQJYA3zfERx0aWxsZUBkZWJpYW4ub3JnAAoJEFeKBJTRxkbR5yEP /353ArQ6qTTiiLHF+ihTfTPQrFVdEDGUVX456EfIHNItc6ow3Slt9U0jS5Asr/PA 8yRsaD/pRBznyOBLUU9i7VJcknhrph2ACnU0OhBJk5H6ebvgD8qCrMbF2JOzV9zt JK2BtPyEYO3NEnUsD/Cd5DKm31UkZASM6btk2J2EUvjs6drtMGlcifiTRuU7DbGs u4YmzToMieEYHqaXuUw04cwiD/6nCY0spatgAqSfPY1SLo7qVT+bZrgGo+sAA3zW mVUVbVXXHBB5//VzMhPKRegnEHbwVmFVxB97wF/6JTCK3TcDsK1g4x8LO2tsvzn7 WSFUiCu+eDpWEza+ESHaBX9RBRC+w4SoiWE26zempmyn0RYVlxtvHKXg2wv5qoEa Y4EQ9J4ZDNhg7hCinqRu3OiJtaoiRhitf2mOQsPKVAnUJtZAN1d693X2E9vpJT6V z9EefGPEajHOxcMlleO+WuoJzt01IBZpvbYeU41rsxPDSVUrUvHKYLZRZR/gwRzX b7JX57KItGj9fNldlEyL3qhkeVS6RViw4g0z84YGBl9I2KEUHQDou8uWd59FYu+T 5LJzCsGHBN/nEUO19N4+yMt4U/2mIZ3LDMnNvlPOSZBmkkHfv8kV/8X2DVFzkW4Y 3BRgkSOOwZVvXF9RIsm5+quX/CQmbaeL2KPitzmvDJdN =g4oz -----END PGP SIGNATURE-----
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