Your message dated Thu, 20 Oct 2016 19:27:28 +0000
with message-id <e1bxizw-0005pk...@franck.debian.org>
and subject line Bug#841440: fixed in rdp-alignment 1.2.0-2
has caused the Debian Bug report #841440,
regarding rdp-alignment: FTBFS with bash as /bin/sh
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
841440: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=841440
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: rdp-alignment
Version: 1.2.0-1
Severity: serious
Justification: fails to build from source
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org

Dear Maintainer,

rdp-alignment fails to build from source in unstable/amd64 when 
/bin/sh is set to bash due to usage of metacharacters with 'echo'
in debian/rules:

  […]

     jh_manifest
  Syntax error in debian/manifest (\tClass-Path: commons-cli.jar 
commons-lang.jar commons-io.jar rdp-readseq.jar) - perhaps you are missing a 
":"?
  jh_manifest: Unknown line in debian/manifest (\tClass-Path: commons-cli.jar 
commons-lang.jar commons-io.jar rdp-readseq.jar),
  debian/rules:9: recipe for target 'binary' failed
  make: *** [binary] Error 25

  […]

The full build log and patch is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      la...@debian.org / chris-lamb.co.uk
       `-

Attachment: rdp-alignment.1.2.0-1.unstable.amd64.log.txt.gz
Description: Binary data

diff --git a/debian/rules b/debian/rules
index 99b93f2..facfef5 100755
--- a/debian/rules
+++ b/debian/rules
@@ -27,7 +27,7 @@ override_dh_auto_build:
        cd src ; jar uf ../rdp-alignment.jar data
        #Also set the manifest like so
        echo usr/share/java/rdp-alignment.jar:    >debian/manifest
-       echo '\tClass-Path: commons-cli.jar commons-lang.jar commons-io.jar 
rdp-readseq.jar' >>debian/manifest
-       echo '\tMain-Class: '`grep '^main.class=' nbproject/project.properties 
| cut -c 12-` >>debian/manifest
+       printf '\tClass-Path: commons-cli.jar commons-lang.jar commons-io.jar 
rdp-readseq.jar\n' >>debian/manifest
+       printf '\tMain-Class: '`grep '^main.class=' 
nbproject/project.properties | cut -c 12-`'\n' >>debian/manifest
 
 

--- End Message ---
--- Begin Message ---
Source: rdp-alignment
Source-Version: 1.2.0-2

We believe that the bug you reported is fixed in the latest version of
rdp-alignment, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 841...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated rdp-alignment package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 20 Oct 2016 20:27:29 +0200
Source: rdp-alignment
Binary: rdp-alignment
Architecture: source all
Version: 1.2.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 rdp-alignment - Ribosomal Database Project (RDP) alignment tools package
Closes: 841440
Changes:
 rdp-alignment (1.2.0-2) unstable; urgency=medium
 .
   * Fix build when /bin/sh is set to bash (thanks for the patch to
     Chris Lamb <la...@debian.org)
     Closes: #841440
   * cme fix dpkg-control (including removing Conflicts with never released
     librdp-alignment-java)
Checksums-Sha1:
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 60f194ae7e8bcb765ebb09998eae75fca87618e9 3308 
rdp-alignment_1.2.0-2.debian.tar.xz
 7935a6319277a63192aa821b3cfded393b8848b3 77476 rdp-alignment_1.2.0-2_all.deb
Checksums-Sha256:
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rdp-alignment_1.2.0-2.dsc
 6774df845d7f32ec59bf65fb23ef98c74aeee479caa63bf54666f0555615aeec 3308 
rdp-alignment_1.2.0-2.debian.tar.xz
 9221735b4736051675d00e300d85602eafc0f3d20d68c1390bf37cd7145169e6 77476 
rdp-alignment_1.2.0-2_all.deb
Files:
 54f8c9a67c885054d21344c451ac1bca 2161 java optional rdp-alignment_1.2.0-2.dsc
 1a414db21094981194895ad1c658536d 3308 java optional 
rdp-alignment_1.2.0-2.debian.tar.xz
 88583e2ffa8f2486c1ab2e83af6a87f3 77476 java optional 
rdp-alignment_1.2.0-2_all.deb

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--- End Message ---

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