Your message dated Sun, 20 Nov 2016 08:35:28 +0100 with message-id <[email protected]> and subject line Re: [Debian-med-packaging] Bug#841560: Could anybody please check the issue in python-skbio has caused the Debian Bug report #841560, regarding python-skbio: FTBFS: Tests failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 841560: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=841560 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: python-skbio Version: 0.5.0-1 Severity: serious Tags: stretch sid User: [email protected] Usertags: qa-ftbfs-20161021 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/tests/test_power.py", > line 491, in test__identify_sample_groups_not_strict > sorted(test_pairs.values())) > File "/usr/lib/python3/dist-packages/pandas/indexes/base.py", line 3317, in > _evaluate_compare > raise ValueError('Lengths must match to compare') > ValueError: Lengths must match to compare > > ---------------------------------------------------------------------- > Ran 2062 tests in 41.510s > > FAILED (SKIP=30, errors=15) > sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' > mode='w' encoding='ANSI_X3.4-1968'> > E: pybuild pybuild:276: test: plugin distutils failed with: exit code=1: cd > /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose > dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.5 returned > exit code 13 > debian/rules:22: recipe for target 'override_dh_auto_test' failed If the failure looks somehow time/timezone related: Note that this rebuild was performed without the 'tzdata' package installed in the chroot. tzdata used be (transitively) part of build-essential, but it no longer is. If this package requires it to build, it should be added to build-depends. For the release team's opinion on this, see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836940#185 If the failure looks LSB-related: similarly to tzdata, lsb-base is not installed in the build chroot. The full build log is available from: http://aws-logs.debian.net/2016/10/21/python-skbio_0.5.0-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Hi Kevin, On Sat, Nov 19, 2016 at 08:46:53AM +1100, Kevin Murray wrote: > AFAICT I think I should have fixed the issues in skbio. I've filed an ROM bug, > and updated to latest upstream. Could I please get an upload and see if the > test failure goes away? Uploaded and it builds on amd64 and kfreebsd-amd64. Thus closing the bug with this mail. Thanks for working on this Andreas. -- http://fam-tille.de
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