Source: soapdenovo2 Version: 240+dfsg1-1 Severity: serious Justification: fails to build from source User: [email protected] Usertags: ftbfs X-Debbugs-Cc: [email protected]
Dear Maintainer,
soapdenovo2 fails to build from source in unstable/amd64:
[…]
iterate.c: In function 'swapedge':
iterate.c:1653:5: warning: implicit declaration of function 'copyEdge'
[-Wimplicit-function-declaration]
copyEdge ( i, num_ed + 1 + 1 );
^~~~~~~~
iterate.c: In function 'fresh':
iterate.c:2156:37: warning: format '%d' expects argument of type 'int', but
argument 3 has type 'long long int' [-Wformat=]
fprintf ( stderr, "Refresh edge: %d kmer(s) found.\n", newfoundcount );
^
iterate.c:2157:37: warning: format '%d' expects argument of type 'int', but
argument 3 has type 'long long int' [-Wformat=]
fprintf ( stderr, "Refresh edge: %d kmer(s) not found.\n",
newnotfoundcount );
^
iterate.c: In function 'Iterate':
iterate.c:2566:4: warning: implicit declaration of function
'removeWeakEdges2' [-Wimplicit-function-declaration]
removeWeakEdges2 ( cutlen, 1, mink );
^~~~~~~~~~~~~~~~
iterate.c:2567:4: warning: implicit declaration of function
'removeLowCovEdges2' [-Wimplicit-function-declaration]
removeLowCovEdges2 ( cutlen, deLowEdge, mink, 0 );
^~~~~~~~~~~~~~~~~~
iterate.c:2576:4: warning: implicit declaration of function 'cutTipsInGraph2'
[-Wimplicit-function-declaration]
cutTipsInGraph2 ( cutlen, 0, 0 );
^~~~~~~~~~~~~~~
make[2]: Leaving directory '«BUILDDIR»/standardPregraph'
standardPregraph/iterate.o: file not recognized: File truncated
collect2: error: ld returned 1 exit status
make[2]: Leaving directory '«BUILDDIR»/standardPregraph'
Makefile:70: recipe for target 'SOAPdenovo-63mer' failed
make[1]: *** [SOAPdenovo-63mer] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '«BUILDDIR»'
dh_auto_build: make -j9 returned exit code 2
debian/rules:15: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[…]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
soapdenovo2.240+dfsg1-1.unstable.amd64.log.txt.gz
Description: Binary data
